JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RFX1_chr19_13956530_14011320	0/0	t0019	1436	1	0	0	1	0	0	copy fasta	RFX1	chr19	13956530	14011320
RFX1_chr19_13956530_14011320	0/0	t0020	1436	1	0	0	1	0	0	copy fasta	RFX1	chr19	13956530	14011320
RFX1_chr19_13956530_14011320	0/0	t0021	1436	1	0	0	1	0	0	copy fasta	RFX1	chr19	13956530	14011320
RFX1_chr19_13956530_14011320	0/0	t0022	1436	1	0	0	0	0	1	copy fasta	RFX1	chr19	13956530	14011320
RFX1_chr19_13956530_14011320	0/0	t0023	1436	1	0	0	1	0	0	copy fasta	RFX1	chr19	13956530	14011320
RFX1_chr19_13956530_14011320	0/0	t0024	1434	1	0	0	1	0	0	copy fasta	RFX1	chr19	13956530	14011320
RFX1_chr19_13956530_14011320	0/0	t0025	1436	1	0	0	1	0	0	copy fasta	RFX1	chr19	13956530	14011320
RFX1_chr19_13956530_14011320	0/0	t0026	1436	1	1	0	0	0	0	copy fasta	RFX1	chr19	13956530	14011320
RFX1_chr19_13956530_14011320	0/0	t0027	1436	1	1	0	0	0	0	copy fasta	RFX1	chr19	13956530	14011320
RFX1_chr19_13956530_14011320	0/0	t0028	1435	1	0	0	0	0	1	copy fasta	RFX1	chr19	13956530	14011320
RFX2_chr19_5988164_6115500	1/0	t0001	1788	236	68	44	84	3	36	copy fasta	RFX2	chr19	5988164	6115500
RFX2_chr19_5988164_6115500	0/1	t0002	1785	24	6	7	4	1	5	copy fasta	RFX2	chr19	5988164	6115500
RFX2_chr19_5988164_6115500	0/0	t0003	1785	16	3	5	4	4	0	copy fasta	RFX2	chr19	5988164	6115500
RFX2_chr19_5988164_6115500	0/0	t0004	1788	6	6	0	0	0	0	copy fasta	RFX2	chr19	5988164	6115500
RFX2_chr19_5988164_6115500	0/0	t0005	1788	6	6	0	0	0	0	copy fasta	RFX2	chr19	5988164	6115500
RFX2_chr19_5988164_6115500	0/0	t0006	1788	4	0	0	4	0	0	copy fasta	RFX2	chr19	5988164	6115500
RFX2_chr19_5988164_6115500	0/0	t0007	1784	3	0	1	0	2	0	copy fasta	RFX2	chr19	5988164	6115500
RFX2_chr19_5988164_6115500	0/0	t0008	1788	2	0	1	0	0	1	copy fasta	RFX2	chr19	5988164	6115500
RFX2_chr19_5988164_6115500	0/0	t0009	1785	2	2	0	0	0	0	copy fasta	RFX2	chr19	5988164	6115500
RFX2_chr19_5988164_6115500	0/0	t0010	1788	1	0	0	1	0	0	copy fasta	RFX2	chr19	5988164	6115500
RFX2_chr19_5988164_6115500	0/0	t0011	1788	1	1	0	0	0	0	copy fasta	RFX2	chr19	5988164	6115500
RFX2_chr19_5988164_6115500	0/0	t0012	1788	1	0	1	0	0	0	copy fasta	RFX2	chr19	5988164	6115500
RFX2_chr19_5988164_6115500	0/0	t0013	1788	1	0	0	1	0	0	copy fasta	RFX2	chr19	5988164	6115500
RFX2_chr19_5988164_6115500	0/0	t0014	1788	1	1	0	0	0	0	copy fasta	RFX2	chr19	5988164	6115500
RFX2_chr19_5988164_6115500	0/0	t0015	1788	1	1	0	0	0	0	copy fasta	RFX2	chr19	5988164	6115500
RFX2_chr19_5988164_6115500	0/0	t0016	1788	1	0	0	1	0	0	copy fasta	RFX2	chr19	5988164	6115500
RFX2_chr19_5988164_6115500	0/0	t0017	1785	1	0	0	1	0	0	copy fasta	RFX2	chr19	5988164	6115500
RFX2_chr19_5988164_6115500	0/0	t0018	1785	1	0	1	0	0	0	copy fasta	RFX2	chr19	5988164	6115500
RFX3_chr9_3213297_3531001	0/1	t0001	7010	42	4	15	18	1	3	copy fasta	RFX3	chr9	3213297	3531001
RFX3_chr9_3213297_3531001	0/0	t0002	7009	17	4	3	10	0	0	copy fasta	RFX3	chr9	3213297	3531001
RFX3_chr9_3213297_3531001	0/0	t0003	7009	12	4	0	8	0	0	copy fasta	RFX3	chr9	3213297	3531001
RFX3_chr9_3213297_3531001	0/0	t0004	7010	10	5	2	0	0	3	copy fasta	RFX3	chr9	3213297	3531001
RFX3_chr9_3213297_3531001	0/0	t0005	7010	8	3	1	1	0	3	copy fasta	RFX3	chr9	3213297	3531001
RFX3_chr9_3213297_3531001	0/0	t0006	7010	6	0	1	5	0	0	copy fasta	RFX3	chr9	3213297	3531001
RFX3_chr9_3213297_3531001	0/0	t0007	7009	4	4	0	0	0	0	copy fasta	RFX3	chr9	3213297	3531001
RFX3_chr9_3213297_3531001	0/0	t0008	7010	4	4	0	0	0	0	copy fasta	RFX3	chr9	3213297	3531001
RFX3_chr9_3213297_3531001	0/0	t0009	7010	4	0	0	4	0	0	copy fasta	RFX3	chr9	3213297	3531001
RFX3_chr9_3213297_3531001	0/0	t0010	7010	4	4	0	0	0	0	copy fasta	RFX3	chr9	3213297	3531001
RFX3_chr9_3213297_3531001	0/0	t0011	7009	3	0	0	2	0	1	copy fasta	RFX3	chr9	3213297	3531001
RFX3_chr9_3213297_3531001	0/0	t0012	7009	3	2	1	0	0	0	copy fasta	RFX3	chr9	3213297	3531001
RFX3_chr9_3213297_3531001	0/0	t0013	7010	3	0	0	3	0	0	copy fasta	RFX3	chr9	3213297	3531001
RFX3_chr9_3213297_3531001	0/0	t0014	7008	3	2	1	0	0	0	copy fasta	RFX3	chr9	3213297	3531001
RFX3_chr9_3213297_3531001	0/0	t0015	7010	3	3	0	0	0	0	copy fasta	RFX3	chr9	3213297	3531001
RFX3_chr9_3213297_3531001	0/0	t0016	7010	2	2	0	0	0	0	copy fasta	RFX3	chr9	3213297	3531001
RFX3_chr9_3213297_3531001	0/0	t0017	7011	2	2	0	0	0	0	copy fasta	RFX3	chr9	3213297	3531001
RFX3_chr9_3213297_3531001	0/0	t0018	7010	2	2	0	0	0	0	copy fasta	RFX3	chr9	3213297	3531001
RFX3_chr9_3213297_3531001	0/0	t0019	7010	2	0	1	1	0	0	copy fasta	RFX3	chr9	3213297	3531001
RFX3_chr9_3213297_3531001	0/0	t0020	7009	2	2	0	0	0	0	copy fasta	RFX3	chr9	3213297	3531001
RFX3_chr9_3213297_3531001	0/0	t0021	7010	2	0	1	1	0	0	copy fasta	RFX3	chr9	3213297	3531001
RFX3_chr9_3213297_3531001	0/0	t0022	7010	2	0	2	0	0	0	copy fasta	RFX3	chr9	3213297	3531001