JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RFX3_chr9_3213297_3531001	0/0	t0073	7010	1	1	0	0	0	0	copy fasta	RFX3	chr9	3213297	3531001
RFX3_chr9_3213297_3531001	0/0	t0074	7010	1	1	0	0	0	0	copy fasta	RFX3	chr9	3213297	3531001
RFX4_chr12_106578004_106767803	1/0	t0001	1652	291	83	64	96	12	35	copy fasta	RFX4	chr12	106578004	106767803
RFX4_chr12_106578004_106767803	0/0	t0002	1652	1	1	0	0	0	0	copy fasta	RFX4	chr12	106578004	106767803
RFX4_chr12_106578004_106767803	0/1	t0003	1652	1	0	0	0	0	0	copy fasta	RFX4	chr12	106578004	106767803
RFX4_chr12_106578004_106767803	0/0	t0004	1652	1	0	0	0	0	1	copy fasta	RFX4	chr12	106578004	106767803
RFX4_chr12_106578004_106767803	0/0	t0005	1652	1	1	0	0	0	0	copy fasta	RFX4	chr12	106578004	106767803
RFX4_chr12_106578004_106767803	0/0	t0006	1652	1	1	0	0	0	0	copy fasta	RFX4	chr12	106578004	106767803
RFX5_chr1_151335640_151352252	0/1	t0001	1720	220	50	39	94	9	27	copy fasta	RFX5	chr1	151335640	151352252
RFX5_chr1_151335640_151352252	1/0	t0002	1720	115	10	15	72	4	13	copy fasta	RFX5	chr1	151335640	151352252
RFX5_chr1_151335640_151352252	0/0	t0003	1720	60	24	12	17	3	4	copy fasta	RFX5	chr1	151335640	151352252
RFX5_chr1_151335640_151352252	0/0	t0004	1720	3	3	0	0	0	0	copy fasta	RFX5	chr1	151335640	151352252
RFX5_chr1_151335640_151352252	0/0	t0005	1723	3	0	0	0	1	2	copy fasta	RFX5	chr1	151335640	151352252
RFX5_chr1_151335640_151352252	0/0	t0006	1720	2	2	0	0	0	0	copy fasta	RFX5	chr1	151335640	151352252
RFX5_chr1_151335640_151352252	0/0	t0007	1720	2	1	0	0	1	0	copy fasta	RFX5	chr1	151335640	151352252
RFX5_chr1_151335640_151352252	0/0	t0008	1720	1	0	0	1	0	0	copy fasta	RFX5	chr1	151335640	151352252
RFX5_chr1_151335640_151352252	0/0	t0009	1720	1	0	0	1	0	0	copy fasta	RFX5	chr1	151335640	151352252
RFX5_chr1_151335640_151352252	0/0	t0010	1720	1	0	0	1	0	0	copy fasta	RFX5	chr1	151335640	151352252
RFX6_chr6_116872242_116937161	1/1	t0001	690	245	71	42	97	12	21	copy fasta	RFX6	chr6	116872242	116937161
RFX6_chr6_116872242_116937161	0/0	t0002	690	121	22	15	61	4	19	copy fasta	RFX6	chr6	116872242	116937161
RFX6_chr6_116872242_116937161	0/0	t0003	690	1	1	0	0	0	0	copy fasta	RFX6	chr6	116872242	116937161
RFX6_chr6_116872242_116937161	0/0	t0004	690	1	0	1	0	0	0	copy fasta	RFX6	chr6	116872242	116937161
RFX6_chr6_116872242_116937161	0/0	t0005	690	1	0	1	0	0	0	copy fasta	RFX6	chr6	116872242	116937161
RFX6_chr6_116872242_116937161	0/0	t0006	690	1	1	0	0	0	0	copy fasta	RFX6	chr6	116872242	116937161
RFX6_chr6_116872242_116937161	0/0	t0007	690	1	0	1	0	0	0	copy fasta	RFX6	chr6	116872242	116937161
RFX6_chr6_116872242_116937161	0/0	t0008	690	1	1	0	0	0	0	copy fasta	RFX6	chr6	116872242	116937161
RFX7_chr15_56082280_56248879	0/0	t0001	6507	118	22	40	36	9	11	copy fasta	RFX7	chr15	56082280	56248879
RFX7_chr15_56082280_56248879	0/0	t0002	6507	86	6	10	62	1	7	copy fasta	RFX7	chr15	56082280	56248879
RFX7_chr15_56082280_56248879	0/0	t0003	6505	16	7	0	8	0	1	copy fasta	RFX7	chr15	56082280	56248879
RFX7_chr15_56082280_56248879	0/0	t0004	6503	15	0	0	15	0	0	copy fasta	RFX7	chr15	56082280	56248879
RFX7_chr15_56082280_56248879	0/0	t0005	6507	14	0	0	14	0	0	copy fasta	RFX7	chr15	56082280	56248879
RFX7_chr15_56082280_56248879	0/0	t0006	6502	12	10	2	0	0	0	copy fasta	RFX7	chr15	56082280	56248879
RFX7_chr15_56082280_56248879	0/0	t0007	6506	10	10	0	0	0	0	copy fasta	RFX7	chr15	56082280	56248879
RFX7_chr15_56082280_56248879	0/1	t0008	6507	10	0	5	1	1	2	copy fasta	RFX7	chr15	56082280	56248879
RFX7_chr15_56082280_56248879	0/0	t0009	6511	5	0	0	5	0	0	copy fasta	RFX7	chr15	56082280	56248879
RFX7_chr15_56082280_56248879	0/0	t0010	6507	5	0	0	5	0	0	copy fasta	RFX7	chr15	56082280	56248879
RFX7_chr15_56082280_56248879	0/0	t0011	6507	5	0	5	0	0	0	copy fasta	RFX7	chr15	56082280	56248879
RFX7_chr15_56082280_56248879	0/0	t0012	6507	4	4	0	0	0	0	copy fasta	RFX7	chr15	56082280	56248879
RFX7_chr15_56082280_56248879	0/0	t0013	6507	4	0	1	0	2	1	copy fasta	RFX7	chr15	56082280	56248879
RFX7_chr15_56082280_56248879	0/0	t0014	6507	4	0	2	0	0	2	copy fasta	RFX7	chr15	56082280	56248879
RFX7_chr15_56082280_56248879	0/0	t0015	6513	3	3	0	0	0	0	copy fasta	RFX7	chr15	56082280	56248879
RFX7_chr15_56082280_56248879	0/0	t0016	6507	3	3	0	0	0	0	copy fasta	RFX7	chr15	56082280	56248879
RFX7_chr15_56082280_56248879	0/0	t0017	6507	3	0	0	3	0	0	copy fasta	RFX7	chr15	56082280	56248879
RFX7_chr15_56082280_56248879	0/0	t0018	6510	3	0	0	3	0	0	copy fasta	RFX7	chr15	56082280	56248879
RFX7_chr15_56082280_56248879	0/0	t0019	6507	2	2	0	0	0	0	copy fasta	RFX7	chr15	56082280	56248879
RFX7_chr15_56082280_56248879	0/0	t0020	6507	2	0	0	2	0	0	copy fasta	RFX7	chr15	56082280	56248879
RFX7_chr15_56082280_56248879	0/0	t0021	6507	2	0	0	2	0	0	copy fasta	RFX7	chr15	56082280	56248879
RFX7_chr15_56082280_56248879	0/0	t0022	6507	2	2	0	0	0	0	copy fasta	RFX7	chr15	56082280	56248879
RFX7_chr15_56082280_56248879	0/0	t0023	6507	2	2	0	0	0	0	copy fasta	RFX7	chr15	56082280	56248879
RFX7_chr15_56082280_56248879	0/0	t0024	6507	1	0	0	1	0	0	copy fasta	RFX7	chr15	56082280	56248879