JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RFX7_chr15_56082280_56248879	0/0	t0025	6507	1	1	0	0	0	0	copy fasta	RFX7	chr15	56082280	56248879
RFX7_chr15_56082280_56248879	0/0	t0026	6507	1	1	0	0	0	0	copy fasta	RFX7	chr15	56082280	56248879
RFX7_chr15_56082280_56248879	0/0	t0027	6502	1	1	0	0	0	0	copy fasta	RFX7	chr15	56082280	56248879
RFX7_chr15_56082280_56248879	0/0	t0028	6502	1	0	0	1	0	0	copy fasta	RFX7	chr15	56082280	56248879
RFX7_chr15_56082280_56248879	0/0	t0029	6503	1	0	0	1	0	0	copy fasta	RFX7	chr15	56082280	56248879
RFX7_chr15_56082280_56248879	0/0	t0030	6507	1	1	0	0	0	0	copy fasta	RFX7	chr15	56082280	56248879
RFX7_chr15_56082280_56248879	0/0	t0031	6507	1	1	0	0	0	0	copy fasta	RFX7	chr15	56082280	56248879
RFX7_chr15_56082280_56248879	0/0	t0032	6507	1	0	0	0	0	1	copy fasta	RFX7	chr15	56082280	56248879
RFX7_chr15_56082280_56248879	0/0	t0033	6507	1	0	0	1	0	0	copy fasta	RFX7	chr15	56082280	56248879
RFX7_chr15_56082280_56248879	0/0	t0034	6505	1	1	0	0	0	0	copy fasta	RFX7	chr15	56082280	56248879
RFX7_chr15_56082280_56248879	1/0	t0035	6503	1	0	0	0	0	0	copy fasta	RFX7	chr15	56082280	56248879
RFX7_chr15_56082280_56248879	0/0	t0036	6507	1	1	0	0	0	0	copy fasta	RFX7	chr15	56082280	56248879
RFX7_chr15_56082280_56248879	0/0	t0037	6507	1	0	0	1	0	0	copy fasta	RFX7	chr15	56082280	56248879
RFX7_chr15_56082280_56248879	0/0	t0038	6507	1	0	0	1	0	0	copy fasta	RFX7	chr15	56082280	56248879
RFX7_chr15_56082280_56248879	0/0	t0039	6507	1	0	1	0	0	0	copy fasta	RFX7	chr15	56082280	56248879
RFX7_chr15_56082280_56248879	0/0	t0040	6507	1	0	0	1	0	0	copy fasta	RFX7	chr15	56082280	56248879
RFX7_chr15_56082280_56248879	0/0	t0041	6505	1	1	0	0	0	0	copy fasta	RFX7	chr15	56082280	56248879
RFX7_chr15_56082280_56248879	0/0	t0042	6505	1	1	0	0	0	0	copy fasta	RFX7	chr15	56082280	56248879
RFX7_chr15_56082280_56248879	0/0	t0043	6507	1	0	0	0	1	0	copy fasta	RFX7	chr15	56082280	56248879
RFX7_chr15_56082280_56248879	0/0	t0044	6507	1	1	0	0	0	0	copy fasta	RFX7	chr15	56082280	56248879
RFX7_chr15_56082280_56248879	0/0	t0045	6507	1	1	0	0	0	0	copy fasta	RFX7	chr15	56082280	56248879
RFX7_chr15_56082280_56248879	0/0	t0046	6507	1	1	0	0	0	0	copy fasta	RFX7	chr15	56082280	56248879
RFX7_chr15_56082280_56248879	0/0	t0047	6490	1	0	0	1	0	0	copy fasta	RFX7	chr15	56082280	56248879
RFX7_chr15_56082280_56248879	0/0	t0048	6507	1	1	0	0	0	0	copy fasta	RFX7	chr15	56082280	56248879
RFX7_chr15_56082280_56248879	0/0	t0049	6507	1	1	0	0	0	0	copy fasta	RFX7	chr15	56082280	56248879
RFX7_chr15_56082280_56248879	0/0	t0050	6507	1	0	1	0	0	0	copy fasta	RFX7	chr15	56082280	56248879
RFX7_chr15_56082280_56248879	0/0	t0051	6507	1	0	1	0	0	0	copy fasta	RFX7	chr15	56082280	56248879
RFX7_chr15_56082280_56248879	0/0	t0052	6505	1	1	0	0	0	0	copy fasta	RFX7	chr15	56082280	56248879
RFX7_chr15_56082280_56248879	0/0	t0053	6505	1	0	0	0	0	1	copy fasta	RFX7	chr15	56082280	56248879
RFX8_chr2_101392359_101480112	1/0	t0001	719	245	66	34	117	11	16	copy fasta	RFX8	chr2	101392359	101480112
RFX8_chr2_101392359_101480112	0/1	t0002	719	87	10	33	27	3	13	copy fasta	RFX8	chr2	101392359	101480112
RFX8_chr2_101392359_101480112	0/0	t0003	719	13	11	1	0	0	1	copy fasta	RFX8	chr2	101392359	101480112
RFX8_chr2_101392359_101480112	0/0	t0004	707	3	3	0	0	0	0	copy fasta	RFX8	chr2	101392359	101480112
RFX8_chr2_101392359_101480112	0/0	t0005	719	1	1	0	0	0	0	copy fasta	RFX8	chr2	101392359	101480112
RFX8_chr2_101392359_101480112	0/0	t0006	719	1	1	0	0	0	0	copy fasta	RFX8	chr2	101392359	101480112
RFX8_chr2_101392359_101480112	0/0	t0007	719	1	1	0	0	0	0	copy fasta	RFX8	chr2	101392359	101480112
RFX8_chr2_101392359_101480112	0/0	t0008	719	1	1	0	0	0	0	copy fasta	RFX8	chr2	101392359	101480112
RFXANK_chr19_19187258_19206866	1/0	t0001	594	259	65	45	114	8	26	copy fasta	RFXANK	chr19	19187258	19206866
RFXANK_chr19_19187258_19206866	0/0	t0002	594	87	7	15	54	3	8	copy fasta	RFXANK	chr19	19187258	19206866
RFXANK_chr19_19187258_19206866	0/1	t0003	594	44	0	11	30	0	2	copy fasta	RFXANK	chr19	19187258	19206866
RFXANK_chr19_19187258_19206866	0/0	t0004	594	17	0	5	0	4	8	copy fasta	RFXANK	chr19	19187258	19206866
RFXANK_chr19_19187258_19206866	0/0	t0005	594	9	9	0	0	0	0	copy fasta	RFXANK	chr19	19187258	19206866
RFXANK_chr19_19187258_19206866	0/0	t0006	594	7	7	0	0	0	0	copy fasta	RFXANK	chr19	19187258	19206866
RFXANK_chr19_19187258_19206866	0/0	t0007	594	4	4	0	0	0	0	copy fasta	RFXANK	chr19	19187258	19206866
RFXANK_chr19_19187258_19206866	0/0	t0008	594	2	2	0	0	0	0	copy fasta	RFXANK	chr19	19187258	19206866
RFXANK_chr19_19187258_19206866	0/0	t0009	594	1	0	0	0	1	0	copy fasta	RFXANK	chr19	19187258	19206866
RFXANK_chr19_19187258_19206866	0/0	t0010	594	1	1	0	0	0	0	copy fasta	RFXANK	chr19	19187258	19206866
RFXANK_chr19_19187258_19206866	0/0	t0011	594	1	1	0	0	0	0	copy fasta	RFXANK	chr19	19187258	19206866
RFXAP_chr13_36814222_36834104	0/1	t0001	1487	241	39	50	115	10	26	copy fasta	RFXAP	chr13	36814222	36834104
RFXAP_chr13_36814222_36834104	1/0	t0002	1488	92	23	7	52	4	5	copy fasta	RFXAP	chr13	36814222	36834104