JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RFXAP_chr13_36814222_36834104	0/0	t0003	1487	54	2	1	37	0	14	copy fasta	RFXAP	chr13	36814222	36834104
RFXAP_chr13_36814222_36834104	0/0	t0004	1487	22	13	4	1	1	3	copy fasta	RFXAP	chr13	36814222	36834104
RFXAP_chr13_36814222_36834104	0/0	t0005	1487	9	9	0	0	0	0	copy fasta	RFXAP	chr13	36814222	36834104
RFXAP_chr13_36814222_36834104	0/0	t0006	1488	3	2	1	0	0	0	copy fasta	RFXAP	chr13	36814222	36834104
RFXAP_chr13_36814222_36834104	0/0	t0007	1487	2	2	0	0	0	0	copy fasta	RFXAP	chr13	36814222	36834104
RFXAP_chr13_36814222_36834104	0/0	t0008	1487	2	0	1	0	1	0	copy fasta	RFXAP	chr13	36814222	36834104
RFXAP_chr13_36814222_36834104	0/0	t0009	1488	2	0	2	0	0	0	copy fasta	RFXAP	chr13	36814222	36834104
RFXAP_chr13_36814222_36834104	0/0	t0010	1487	1	0	1	0	0	0	copy fasta	RFXAP	chr13	36814222	36834104
RFXAP_chr13_36814222_36834104	0/0	t0011	1487	1	0	1	0	0	0	copy fasta	RFXAP	chr13	36814222	36834104
RFXAP_chr13_36814222_36834104	0/0	t0012	1487	1	0	0	1	0	0	copy fasta	RFXAP	chr13	36814222	36834104
RGCC_chr13_41452550_41475871	1/1	t0001	545	445	90	84	212	16	41	copy fasta	RGCC	chr13	41452550	41475871
RGCC_chr13_41452550_41475871	0/0	t0002	545	1	1	0	0	0	0	copy fasta	RGCC	chr13	41452550	41475871
RGCC_chr13_41452550_41475871	0/0	t0003	545	1	1	0	0	0	0	copy fasta	RGCC	chr13	41452550	41475871
RGCC_chr13_41452550_41475871	0/0	t0004	545	1	0	0	0	0	1	copy fasta	RGCC	chr13	41452550	41475871
RGL1_chr1_183800120_183933532	1/0	t0001	2419	108	23	20	49	5	10	copy fasta	RGL1	chr1	183800120	183933532
RGL1_chr1_183800120_183933532	0/1	t0002	2419	97	26	22	35	3	10	copy fasta	RGL1	chr1	183800120	183933532
RGL1_chr1_183800120_183933532	0/0	t0003	2420	59	15	19	15	5	5	copy fasta	RGL1	chr1	183800120	183933532
RGL1_chr1_183800120_183933532	0/0	t0004	2420	5	3	1	0	0	1	copy fasta	RGL1	chr1	183800120	183933532
RGL1_chr1_183800120_183933532	0/0	t0005	2419	4	3	0	1	0	0	copy fasta	RGL1	chr1	183800120	183933532
RGL1_chr1_183800120_183933532	0/0	t0006	2419	3	3	0	0	0	0	copy fasta	RGL1	chr1	183800120	183933532
RGL1_chr1_183800120_183933532	0/0	t0007	2419	3	1	0	2	0	0	copy fasta	RGL1	chr1	183800120	183933532
RGL1_chr1_183800120_183933532	0/0	t0008	2420	3	2	1	0	0	0	copy fasta	RGL1	chr1	183800120	183933532
RGL1_chr1_183800120_183933532	0/0	t0009	2419	2	1	1	0	0	0	copy fasta	RGL1	chr1	183800120	183933532
RGL1_chr1_183800120_183933532	0/0	t0010	2419	2	1	1	0	0	0	copy fasta	RGL1	chr1	183800120	183933532
RGL1_chr1_183800120_183933532	0/0	t0011	2419	2	2	0	0	0	0	copy fasta	RGL1	chr1	183800120	183933532
RGL1_chr1_183800120_183933532	0/0	t0012	2419	2	0	1	0	1	0	copy fasta	RGL1	chr1	183800120	183933532
RGL1_chr1_183800120_183933532	0/0	t0013	2419	1	1	0	0	0	0	copy fasta	RGL1	chr1	183800120	183933532
RGL1_chr1_183800120_183933532	0/0	t0014	2420	1	1	0	0	0	0	copy fasta	RGL1	chr1	183800120	183933532
RGL1_chr1_183800120_183933532	0/0	t0015	2419	1	1	0	0	0	0	copy fasta	RGL1	chr1	183800120	183933532
RGL1_chr1_183800120_183933532	0/0	t0016	2420	1	1	0	0	0	0	copy fasta	RGL1	chr1	183800120	183933532
RGL1_chr1_183800120_183933532	0/0	t0017	2419	1	0	0	1	0	0	copy fasta	RGL1	chr1	183800120	183933532
RGL1_chr1_183800120_183933532	0/0	t0018	2419	1	0	0	1	0	0	copy fasta	RGL1	chr1	183800120	183933532
RGL2_chr6_33286654_33303942	0/1	t0001	563	380	86	73	170	16	34	copy fasta	RGL2	chr6	33286654	33303942
RGL2_chr6_33286654_33303942	0/0	t0002	563	7	6	1	0	0	0	copy fasta	RGL2	chr6	33286654	33303942
RGL2_chr6_33286654_33303942	0/0	t0003	563	2	2	0	0	0	0	copy fasta	RGL2	chr6	33286654	33303942
RGL2_chr6_33286654_33303942	0/0	t0004	563	1	1	0	0	0	0	copy fasta	RGL2	chr6	33286654	33303942
RGL2_chr6_33286654_33303942	0/0	t0005	563	1	1	0	0	0	0	copy fasta	RGL2	chr6	33286654	33303942
RGL2_chr6_33286654_33303942	0/0	t0006	563	1	0	1	0	0	0	copy fasta	RGL2	chr6	33286654	33303942
RGL2_chr6_33286654_33303942	0/0	t0007	563	1	0	1	0	0	0	copy fasta	RGL2	chr6	33286654	33303942
RGL3_chr19_11389060_11424314	1/1	t0001	379	309	91	51	128	14	23	copy fasta	RGL3	chr19	11389060	11424314
RGL3_chr19_11389060_11424314	0/0	t0002	379	88	1	17	53	2	15	copy fasta	RGL3	chr19	11389060	11424314
RGL3_chr19_11389060_11424314	0/0	t0003	379	2	0	0	2	0	0	copy fasta	RGL3	chr19	11389060	11424314
RGL3_chr19_11389060_11424314	0/0	t0004	379	1	1	0	0	0	0	copy fasta	RGL3	chr19	11389060	11424314
RGL3_chr19_11389060_11424314	0/0	t0005	379	1	0	0	1	0	0	copy fasta	RGL3	chr19	11389060	11424314
RGL3_chr19_11389060_11424314	0/0	t0006	379	1	1	0	0	0	0	copy fasta	RGL3	chr19	11389060	11424314
RGL4_chr22_23686013_23704168	1/0	t0001	1304	259	31	52	132	13	30	copy fasta	RGL4	chr22	23686013	23704168
RGL4_chr22_23686013_23704168	0/1	t0002	1304	73	9	8	49	2	4	copy fasta	RGL4	chr22	23686013	23704168
RGL4_chr22_23686013_23704168	0/0	t0003	1304	31	29	2	0	0	0	copy fasta	RGL4	chr22	23686013	23704168
RGL4_chr22_23686013_23704168	0/0	t0004	1304	28	7	11	8	1	1	copy fasta	RGL4	chr22	23686013	23704168
RGL4_chr22_23686013_23704168	0/0	t0005	1304	8	0	0	4	0	4	copy fasta	RGL4	chr22	23686013	23704168