JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RGL4_chr22_23686013_23704168	0/0	t0006	1304	6	4	2	0	0	0	copy fasta	RGL4	chr22	23686013	23704168
RGL4_chr22_23686013_23704168	0/0	t0007	1304	5	4	1	0	0	0	copy fasta	RGL4	chr22	23686013	23704168
RGL4_chr22_23686013_23704168	0/0	t0008	1304	2	2	0	0	0	0	copy fasta	RGL4	chr22	23686013	23704168
RGL4_chr22_23686013_23704168	0/0	t0009	1304	2	0	0	0	0	2	copy fasta	RGL4	chr22	23686013	23704168
RGL4_chr22_23686013_23704168	0/0	t0010	1304	2	2	0	0	0	0	copy fasta	RGL4	chr22	23686013	23704168
RGL4_chr22_23686013_23704168	0/0	t0011	1304	1	0	1	0	0	0	copy fasta	RGL4	chr22	23686013	23704168
RGL4_chr22_23686013_23704168	0/0	t0012	1304	1	1	0	0	0	0	copy fasta	RGL4	chr22	23686013	23704168
RGL4_chr22_23686013_23704168	0/0	t0013	1304	1	1	0	0	0	0	copy fasta	RGL4	chr22	23686013	23704168
RGL4_chr22_23686013_23704168	0/0	t0014	1304	1	1	0	0	0	0	copy fasta	RGL4	chr22	23686013	23704168
RGL4_chr22_23686013_23704168	0/0	t0015	1304	1	0	0	0	0	1	copy fasta	RGL4	chr22	23686013	23704168
RGL4_chr22_23686013_23704168	0/0	t0016	1304	1	0	1	0	0	0	copy fasta	RGL4	chr22	23686013	23704168
RGL4_chr22_23686013_23704168	0/0	t0017	1304	1	0	0	1	0	0	copy fasta	RGL4	chr22	23686013	23704168
RGL4_chr22_23686013_23704168	0/0	t0018	1304	1	1	0	0	0	0	copy fasta	RGL4	chr22	23686013	23704168
RGMA_chr15_93030271_93094211	0/0	t0001	10011	38	0	0	34	0	4	copy fasta	RGMA	chr15	93030271	93094211
RGMA_chr15_93030271_93094211	0/0	t0002	10011	16	0	1	15	0	0	copy fasta	RGMA	chr15	93030271	93094211
RGMA_chr15_93030271_93094211	0/0	t0003	10011	12	0	0	11	0	1	copy fasta	RGMA	chr15	93030271	93094211
RGMA_chr15_93030271_93094211	0/0	t0004	10017	10	1	9	0	0	0	copy fasta	RGMA	chr15	93030271	93094211
RGMA_chr15_93030271_93094211	0/0	t0005	10027	10	0	3	3	1	3	copy fasta	RGMA	chr15	93030271	93094211
RGMA_chr15_93030271_93094211	0/0	t0006	10027	10	10	0	0	0	0	copy fasta	RGMA	chr15	93030271	93094211
RGMA_chr15_93030271_93094211	0/0	t0007	10011	9	0	3	5	0	1	copy fasta	RGMA	chr15	93030271	93094211
RGMA_chr15_93030271_93094211	0/0	t0008	10027	7	0	1	3	1	2	copy fasta	RGMA	chr15	93030271	93094211
RGMA_chr15_93030271_93094211	0/0	t0009	10012	7	0	0	7	0	0	copy fasta	RGMA	chr15	93030271	93094211
RGMA_chr15_93030271_93094211	0/0	t0010	10009	7	7	0	0	0	0	copy fasta	RGMA	chr15	93030271	93094211
RGMA_chr15_93030271_93094211	0/0	t0011	10011	6	0	0	6	0	0	copy fasta	RGMA	chr15	93030271	93094211
RGMA_chr15_93030271_93094211	0/0	t0012	10031	6	0	6	0	0	0	copy fasta	RGMA	chr15	93030271	93094211
RGMA_chr15_93030271_93094211	0/0	t0013	10011	5	0	0	5	0	0	copy fasta	RGMA	chr15	93030271	93094211
RGMA_chr15_93030271_93094211	0/0	t0014	10026	5	0	5	0	0	0	copy fasta	RGMA	chr15	93030271	93094211
RGMA_chr15_93030271_93094211	0/1	t0015	10050	4	0	2	0	1	0	copy fasta	RGMA	chr15	93030271	93094211
RGMA_chr15_93030271_93094211	0/0	t0016	10011	3	0	0	3	0	0	copy fasta	RGMA	chr15	93030271	93094211
RGMA_chr15_93030271_93094211	0/0	t0017	10011	3	0	0	3	0	0	copy fasta	RGMA	chr15	93030271	93094211
RGMA_chr15_93030271_93094211	0/0	t0018	10034	3	1	2	0	0	0	copy fasta	RGMA	chr15	93030271	93094211
RGMA_chr15_93030271_93094211	0/0	t0019	10027	3	0	3	0	0	0	copy fasta	RGMA	chr15	93030271	93094211
RGMA_chr15_93030271_93094211	0/0	t0020	10027	3	3	0	0	0	0	copy fasta	RGMA	chr15	93030271	93094211
RGMA_chr15_93030271_93094211	0/0	t0021	10051	2	2	0	0	0	0	copy fasta	RGMA	chr15	93030271	93094211
RGMA_chr15_93030271_93094211	0/0	t0022	10022	2	0	0	0	0	2	copy fasta	RGMA	chr15	93030271	93094211
RGMA_chr15_93030271_93094211	0/0	t0023	10020	2	2	0	0	0	0	copy fasta	RGMA	chr15	93030271	93094211
RGMA_chr15_93030271_93094211	0/0	t0024	10021	2	2	0	0	0	0	copy fasta	RGMA	chr15	93030271	93094211
RGMA_chr15_93030271_93094211	0/0	t0025	10011	2	0	0	2	0	0	copy fasta	RGMA	chr15	93030271	93094211
RGMA_chr15_93030271_93094211	0/0	t0026	10027	2	0	0	0	0	2	copy fasta	RGMA	chr15	93030271	93094211
RGMA_chr15_93030271_93094211	0/0	t0027	10027	2	0	0	1	0	1	copy fasta	RGMA	chr15	93030271	93094211
RGMA_chr15_93030271_93094211	0/0	t0028	10027	2	0	1	0	0	1	copy fasta	RGMA	chr15	93030271	93094211
RGMA_chr15_93030271_93094211	0/0	t0029	10035	2	2	0	0	0	0	copy fasta	RGMA	chr15	93030271	93094211
RGMA_chr15_93030271_93094211	0/0	t0030	10027	2	0	0	0	2	0	copy fasta	RGMA	chr15	93030271	93094211
RGMA_chr15_93030271_93094211	0/0	t0031	10027	2	0	2	0	0	0	copy fasta	RGMA	chr15	93030271	93094211
RGMA_chr15_93030271_93094211	0/0	t0032	10026	2	0	2	0	0	0	copy fasta	RGMA	chr15	93030271	93094211
RGMA_chr15_93030271_93094211	0/0	t0033	10009	2	2	0	0	0	0	copy fasta	RGMA	chr15	93030271	93094211
RGMA_chr15_93030271_93094211	0/0	t0034	10027	2	0	2	0	0	0	copy fasta	RGMA	chr15	93030271	93094211
RGMA_chr15_93030271_93094211	0/0	t0035	10028	2	2	0	0	0	0	copy fasta	RGMA	chr15	93030271	93094211
RGMA_chr15_93030271_93094211	0/0	t0036	10026	2	0	1	0	1	0	copy fasta	RGMA	chr15	93030271	93094211
RGMA_chr15_93030271_93094211	0/0	t0037	10011	2	0	0	2	0	0	copy fasta	RGMA	chr15	93030271	93094211