JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RGMA_chr15_93030271_93094211	0/0	t0038	10011	2	0	0	2	0	0	copy fasta	RGMA	chr15	93030271	93094211
RGMA_chr15_93030271_93094211	0/0	t0039	10011	2	0	0	2	0	0	copy fasta	RGMA	chr15	93030271	93094211
RGMA_chr15_93030271_93094211	0/0	t0040	10011	2	0	0	2	0	0	copy fasta	RGMA	chr15	93030271	93094211
RGMA_chr15_93030271_93094211	0/0	t0041	10020	2	0	0	0	2	0	copy fasta	RGMA	chr15	93030271	93094211
RGMA_chr15_93030271_93094211	0/0	t0042	10022	2	2	0	0	0	0	copy fasta	RGMA	chr15	93030271	93094211
RGMA_chr15_93030271_93094211	0/0	t0043	10021	2	2	0	0	0	0	copy fasta	RGMA	chr15	93030271	93094211
RGMA_chr15_93030271_93094211	0/0	t0044	10011	2	1	1	0	0	0	copy fasta	RGMA	chr15	93030271	93094211
RGMA_chr15_93030271_93094211	0/0	t0045	10023	2	2	0	0	0	0	copy fasta	RGMA	chr15	93030271	93094211
RGMA_chr15_93030271_93094211	0/0	t0046	10005	2	2	0	0	0	0	copy fasta	RGMA	chr15	93030271	93094211
RGMA_chr15_93030271_93094211	0/0	t0047	10027	2	0	0	0	1	1	copy fasta	RGMA	chr15	93030271	93094211
RGMA_chr15_93030271_93094211	0/0	t0048	10027	2	1	0	0	0	1	copy fasta	RGMA	chr15	93030271	93094211
RGMA_chr15_93030271_93094211	0/0	t0049	10019	2	0	0	0	0	2	copy fasta	RGMA	chr15	93030271	93094211
RGMA_chr15_93030271_93094211	0/0	t0050	10026	2	0	2	0	0	0	copy fasta	RGMA	chr15	93030271	93094211
RGMA_chr15_93030271_93094211	0/0	t0051	10045	2	0	0	2	0	0	copy fasta	RGMA	chr15	93030271	93094211
RGMA_chr15_93030271_93094211	0/0	t0052	10036	2	0	1	0	0	1	copy fasta	RGMA	chr15	93030271	93094211
RGMA_chr15_93030271_93094211	0/0	t0053	10027	2	2	0	0	0	0	copy fasta	RGMA	chr15	93030271	93094211
RGMA_chr15_93030271_93094211	0/0	t0054	10026	2	0	0	0	0	2	copy fasta	RGMA	chr15	93030271	93094211
RGMA_chr15_93030271_93094211	0/0	t0055	10068	2	0	1	0	1	0	copy fasta	RGMA	chr15	93030271	93094211
RGMA_chr15_93030271_93094211	0/0	t0056	10022	2	0	0	0	2	0	copy fasta	RGMA	chr15	93030271	93094211
RGMA_chr15_93030271_93094211	0/0	t0057	10013	1	1	0	0	0	0	copy fasta	RGMA	chr15	93030271	93094211
RGMA_chr15_93030271_93094211	0/0	t0058	10027	1	1	0	0	0	0	copy fasta	RGMA	chr15	93030271	93094211
RGMA_chr15_93030271_93094211	0/0	t0059	10011	1	1	0	0	0	0	copy fasta	RGMA	chr15	93030271	93094211
RGMA_chr15_93030271_93094211	0/0	t0060	10009	1	1	0	0	0	0	copy fasta	RGMA	chr15	93030271	93094211
RGMA_chr15_93030271_93094211	0/0	t0061	10025	1	1	0	0	0	0	copy fasta	RGMA	chr15	93030271	93094211
RGMA_chr15_93030271_93094211	0/0	t0062	10024	1	1	0	0	0	0	copy fasta	RGMA	chr15	93030271	93094211
RGMA_chr15_93030271_93094211	0/0	t0063	10011	1	0	0	1	0	0	copy fasta	RGMA	chr15	93030271	93094211
RGMA_chr15_93030271_93094211	0/0	t0064	10024	1	1	0	0	0	0	copy fasta	RGMA	chr15	93030271	93094211
RGMA_chr15_93030271_93094211	0/0	t0065	10026	1	1	0	0	0	0	copy fasta	RGMA	chr15	93030271	93094211
RGMA_chr15_93030271_93094211	0/0	t0066	10011	1	0	0	0	0	1	copy fasta	RGMA	chr15	93030271	93094211
RGMA_chr15_93030271_93094211	1/0	t0067	10007	1	0	0	0	0	0	copy fasta	RGMA	chr15	93030271	93094211
RGMA_chr15_93030271_93094211	0/0	t0068	10022	1	1	0	0	0	0	copy fasta	RGMA	chr15	93030271	93094211
RGMA_chr15_93030271_93094211	0/0	t0069	10001	1	1	0	0	0	0	copy fasta	RGMA	chr15	93030271	93094211
RGMA_chr15_93030271_93094211	0/0	t0070	10050	1	1	0	0	0	0	copy fasta	RGMA	chr15	93030271	93094211
RGMA_chr15_93030271_93094211	0/0	t0071	10022	1	1	0	0	0	0	copy fasta	RGMA	chr15	93030271	93094211
RGMA_chr15_93030271_93094211	0/0	t0072	10022	1	1	0	0	0	0	copy fasta	RGMA	chr15	93030271	93094211
RGMA_chr15_93030271_93094211	0/0	t0073	10020	1	1	0	0	0	0	copy fasta	RGMA	chr15	93030271	93094211
RGMA_chr15_93030271_93094211	0/0	t0074	10031	1	1	0	0	0	0	copy fasta	RGMA	chr15	93030271	93094211
RGMA_chr15_93030271_93094211	0/0	t0075	10029	1	1	0	0	0	0	copy fasta	RGMA	chr15	93030271	93094211
RGMA_chr15_93030271_93094211	0/0	t0076	10035	1	1	0	0	0	0	copy fasta	RGMA	chr15	93030271	93094211
RGMA_chr15_93030271_93094211	0/0	t0077	10058	1	0	1	0	0	0	copy fasta	RGMA	chr15	93030271	93094211
RGMA_chr15_93030271_93094211	0/0	t0078	10056	1	0	1	0	0	0	copy fasta	RGMA	chr15	93030271	93094211
RGMA_chr15_93030271_93094211	0/0	t0079	10027	1	0	1	0	0	0	copy fasta	RGMA	chr15	93030271	93094211
RGMA_chr15_93030271_93094211	0/0	t0080	10027	1	0	0	0	0	1	copy fasta	RGMA	chr15	93030271	93094211
RGMA_chr15_93030271_93094211	0/0	t0081	10070	1	0	0	1	0	0	copy fasta	RGMA	chr15	93030271	93094211
RGMA_chr15_93030271_93094211	0/0	t0082	10027	1	1	0	0	0	0	copy fasta	RGMA	chr15	93030271	93094211
RGMA_chr15_93030271_93094211	0/0	t0083	10034	1	1	0	0	0	0	copy fasta	RGMA	chr15	93030271	93094211
RGMA_chr15_93030271_93094211	0/0	t0084	10035	1	1	0	0	0	0	copy fasta	RGMA	chr15	93030271	93094211
RGMA_chr15_93030271_93094211	0/0	t0085	10035	1	1	0	0	0	0	copy fasta	RGMA	chr15	93030271	93094211
RGMA_chr15_93030271_93094211	0/0	t0086	10027	1	0	0	0	1	0	copy fasta	RGMA	chr15	93030271	93094211
RGMA_chr15_93030271_93094211	0/0	t0087	10027	1	1	0	0	0	0	copy fasta	RGMA	chr15	93030271	93094211