JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RGMA_chr15_93030271_93094211	0/0	t0138	10011	1	0	1	0	0	0	copy fasta	RGMA	chr15	93030271	93094211
RGMA_chr15_93030271_93094211	0/0	t0139	10018	1	0	1	0	0	0	copy fasta	RGMA	chr15	93030271	93094211
RGMA_chr15_93030271_93094211	0/0	t0140	10017	1	0	0	1	0	0	copy fasta	RGMA	chr15	93030271	93094211
RGMA_chr15_93030271_93094211	0/0	t0141	10011	1	0	1	0	0	0	copy fasta	RGMA	chr15	93030271	93094211
RGMA_chr15_93030271_93094211	0/0	t0142	10032	1	0	0	0	0	1	copy fasta	RGMA	chr15	93030271	93094211
RGMA_chr15_93030271_93094211	0/0	t0143	10011	1	0	0	1	0	0	copy fasta	RGMA	chr15	93030271	93094211
RGMA_chr15_93030271_93094211	0/0	t0144	10010	1	0	0	1	0	0	copy fasta	RGMA	chr15	93030271	93094211
RGMA_chr15_93030271_93094211	0/0	t0145	10011	1	0	0	1	0	0	copy fasta	RGMA	chr15	93030271	93094211
RGMA_chr15_93030271_93094211	0/0	t0146	10011	1	0	0	1	0	0	copy fasta	RGMA	chr15	93030271	93094211
RGMA_chr15_93030271_93094211	0/0	t0147	10029	1	0	0	1	0	0	copy fasta	RGMA	chr15	93030271	93094211
RGMA_chr15_93030271_93094211	0/0	t0148	10012	1	0	0	1	0	0	copy fasta	RGMA	chr15	93030271	93094211
RGMA_chr15_93030271_93094211	0/0	t0149	10011	1	0	0	1	0	0	copy fasta	RGMA	chr15	93030271	93094211
RGMA_chr15_93030271_93094211	0/0	t0150	10011	1	0	0	1	0	0	copy fasta	RGMA	chr15	93030271	93094211
RGMA_chr15_93030271_93094211	0/0	t0151	10011	1	0	0	1	0	0	copy fasta	RGMA	chr15	93030271	93094211
RGMA_chr15_93030271_93094211	0/0	t0152	10011	1	0	0	0	0	1	copy fasta	RGMA	chr15	93030271	93094211
RGMA_chr15_93030271_93094211	0/0	t0153	10011	1	0	0	1	0	0	copy fasta	RGMA	chr15	93030271	93094211
RGMA_chr15_93030271_93094211	0/0	t0154	10011	1	0	0	1	0	0	copy fasta	RGMA	chr15	93030271	93094211
RGMA_chr15_93030271_93094211	0/0	t0155	10027	1	0	0	0	0	1	copy fasta	RGMA	chr15	93030271	93094211
RGMA_chr15_93030271_93094211	0/0	t0156	10027	1	0	0	0	0	1	copy fasta	RGMA	chr15	93030271	93094211
RGMA_chr15_93030271_93094211	0/0	t0157	10011	1	0	0	1	0	0	copy fasta	RGMA	chr15	93030271	93094211
RGMA_chr15_93030271_93094211	0/0	t0158	10027	1	0	0	1	0	0	copy fasta	RGMA	chr15	93030271	93094211
RGMA_chr15_93030271_93094211	0/0	t0159	10011	1	0	0	1	0	0	copy fasta	RGMA	chr15	93030271	93094211
RGMA_chr15_93030271_93094211	0/0	t0160	10011	1	0	0	1	0	0	copy fasta	RGMA	chr15	93030271	93094211
RGMA_chr15_93030271_93094211	0/0	t0161	10011	1	0	0	1	0	0	copy fasta	RGMA	chr15	93030271	93094211
RGMA_chr15_93030271_93094211	0/0	t0162	10011	1	0	1	0	0	0	copy fasta	RGMA	chr15	93030271	93094211
RGMA_chr15_93030271_93094211	0/0	t0163	10043	1	1	0	0	0	0	copy fasta	RGMA	chr15	93030271	93094211
RGMA_chr15_93030271_93094211	0/0	t0164	10005	1	0	0	1	0	0	copy fasta	RGMA	chr15	93030271	93094211
RGMA_chr15_93030271_93094211	0/0	t0165	10013	1	0	0	0	0	1	copy fasta	RGMA	chr15	93030271	93094211
RGMA_chr15_93030271_93094211	0/0	t0166	10005	1	0	0	1	0	0	copy fasta	RGMA	chr15	93030271	93094211
RGMA_chr15_93030271_93094211	0/0	t0167	10005	1	0	0	0	0	1	copy fasta	RGMA	chr15	93030271	93094211
RGMA_chr15_93030271_93094211	0/0	t0168	10011	1	1	0	0	0	0	copy fasta	RGMA	chr15	93030271	93094211
RGMA_chr15_93030271_93094211	0/0	t0169	10026	1	1	0	0	0	0	copy fasta	RGMA	chr15	93030271	93094211
RGMA_chr15_93030271_93094211	0/0	t0170	10011	1	1	0	0	0	0	copy fasta	RGMA	chr15	93030271	93094211
RGMA_chr15_93030271_93094211	0/0	t0171	10027	1	0	0	1	0	0	copy fasta	RGMA	chr15	93030271	93094211
RGMA_chr15_93030271_93094211	0/0	t0172	10027	1	0	0	1	0	0	copy fasta	RGMA	chr15	93030271	93094211
RGMA_chr15_93030271_93094211	0/0	t0173	10027	1	0	0	1	0	0	copy fasta	RGMA	chr15	93030271	93094211
RGMA_chr15_93030271_93094211	0/0	t0174	10027	1	0	0	0	0	1	copy fasta	RGMA	chr15	93030271	93094211
RGMA_chr15_93030271_93094211	0/0	t0175	10027	1	0	0	1	0	0	copy fasta	RGMA	chr15	93030271	93094211
RGMA_chr15_93030271_93094211	0/0	t0176	10068	1	0	1	0	0	0	copy fasta	RGMA	chr15	93030271	93094211
RGMA_chr15_93030271_93094211	0/0	t0177	10027	1	0	0	1	0	0	copy fasta	RGMA	chr15	93030271	93094211
RGMA_chr15_93030271_93094211	0/0	t0178	10028	1	0	1	0	0	0	copy fasta	RGMA	chr15	93030271	93094211
RGMA_chr15_93030271_93094211	0/0	t0179	10027	1	0	0	1	0	0	copy fasta	RGMA	chr15	93030271	93094211
RGMA_chr15_93030271_93094211	0/0	t0180	10027	1	0	0	0	0	1	copy fasta	RGMA	chr15	93030271	93094211
RGMA_chr15_93030271_93094211	0/0	t0181	10027	1	0	0	1	0	0	copy fasta	RGMA	chr15	93030271	93094211
RGMA_chr15_93030271_93094211	0/0	t0182	10027	1	1	0	0	0	0	copy fasta	RGMA	chr15	93030271	93094211
RGMA_chr15_93030271_93094211	0/0	t0183	10027	1	1	0	0	0	0	copy fasta	RGMA	chr15	93030271	93094211
RGMA_chr15_93030271_93094211	0/0	t0184	10035	1	1	0	0	0	0	copy fasta	RGMA	chr15	93030271	93094211
RGMA_chr15_93030271_93094211	0/0	t0185	10034	1	1	0	0	0	0	copy fasta	RGMA	chr15	93030271	93094211
RGMA_chr15_93030271_93094211	0/0	t0186	10027	1	0	1	0	0	0	copy fasta	RGMA	chr15	93030271	93094211
RGMA_chr15_93030271_93094211	0/0	t0187	10027	1	0	0	0	1	0	copy fasta	RGMA	chr15	93030271	93094211