JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RGMA_chr15_93030271_93094211	0/0	t0188	10027	1	0	1	0	0	0	copy fasta	RGMA	chr15	93030271	93094211
RGMA_chr15_93030271_93094211	0/0	t0189	10027	1	0	0	1	0	0	copy fasta	RGMA	chr15	93030271	93094211
RGMA_chr15_93030271_93094211	0/0	t0190	10027	1	1	0	0	0	0	copy fasta	RGMA	chr15	93030271	93094211
RGMA_chr15_93030271_93094211	0/0	t0191	10027	1	0	1	0	0	0	copy fasta	RGMA	chr15	93030271	93094211
RGMA_chr15_93030271_93094211	0/0	t0192	10010	1	1	0	0	0	0	copy fasta	RGMA	chr15	93030271	93094211
RGMA_chr15_93030271_93094211	0/0	t0193	10009	1	1	0	0	0	0	copy fasta	RGMA	chr15	93030271	93094211
RGMA_chr15_93030271_93094211	0/0	t0194	10026	1	0	0	1	0	0	copy fasta	RGMA	chr15	93030271	93094211
RGMA_chr15_93030271_93094211	0/0	t0195	10026	1	0	1	0	0	0	copy fasta	RGMA	chr15	93030271	93094211
RGMA_chr15_93030271_93094211	0/0	t0196	10044	1	0	0	1	0	0	copy fasta	RGMA	chr15	93030271	93094211
RGMA_chr15_93030271_93094211	0/0	t0197	10047	1	0	0	1	0	0	copy fasta	RGMA	chr15	93030271	93094211
RGMA_chr15_93030271_93094211	0/0	t0198	10043	1	0	0	0	0	1	copy fasta	RGMA	chr15	93030271	93094211
RGMA_chr15_93030271_93094211	0/0	t0199	10011	1	0	0	1	0	0	copy fasta	RGMA	chr15	93030271	93094211
RGMA_chr15_93030271_93094211	0/0	t0200	10026	1	1	0	0	0	0	copy fasta	RGMA	chr15	93030271	93094211
RGMA_chr15_93030271_93094211	0/0	t0201	10027	1	1	0	0	0	0	copy fasta	RGMA	chr15	93030271	93094211
RGMA_chr15_93030271_93094211	0/0	t0202	10020	1	1	0	0	0	0	copy fasta	RGMA	chr15	93030271	93094211
RGMA_chr15_93030271_93094211	0/0	t0203	10012	1	0	0	1	0	0	copy fasta	RGMA	chr15	93030271	93094211
RGMA_chr15_93030271_93094211	0/0	t0204	10036	1	0	0	0	0	1	copy fasta	RGMA	chr15	93030271	93094211
RGMA_chr15_93030271_93094211	0/0	t0205	10027	1	1	0	0	0	0	copy fasta	RGMA	chr15	93030271	93094211
RGMA_chr15_93030271_93094211	0/0	t0206	10036	1	0	0	0	0	1	copy fasta	RGMA	chr15	93030271	93094211
RGMA_chr15_93030271_93094211	0/0	t0207	10037	1	0	1	0	0	0	copy fasta	RGMA	chr15	93030271	93094211
RGMA_chr15_93030271_93094211	0/0	t0208	10036	1	0	0	0	0	1	copy fasta	RGMA	chr15	93030271	93094211
RGMA_chr15_93030271_93094211	0/0	t0209	10035	1	0	0	0	0	1	copy fasta	RGMA	chr15	93030271	93094211
RGMA_chr15_93030271_93094211	0/0	t0210	10035	1	0	1	0	0	0	copy fasta	RGMA	chr15	93030271	93094211
RGMA_chr15_93030271_93094211	0/0	t0211	10027	1	1	0	0	0	0	copy fasta	RGMA	chr15	93030271	93094211
RGMA_chr15_93030271_93094211	0/0	t0212	10028	1	1	0	0	0	0	copy fasta	RGMA	chr15	93030271	93094211
RGMA_chr15_93030271_93094211	0/0	t0213	10034	1	1	0	0	0	0	copy fasta	RGMA	chr15	93030271	93094211
RGMA_chr15_93030271_93094211	0/0	t0214	10035	1	1	0	0	0	0	copy fasta	RGMA	chr15	93030271	93094211
RGMA_chr15_93030271_93094211	0/0	t0215	10027	1	0	0	0	0	1	copy fasta	RGMA	chr15	93030271	93094211
RGMA_chr15_93030271_93094211	0/0	t0216	10027	1	0	1	0	0	0	copy fasta	RGMA	chr15	93030271	93094211
RGMA_chr15_93030271_93094211	0/0	t0217	10034	1	0	1	0	0	0	copy fasta	RGMA	chr15	93030271	93094211
RGMA_chr15_93030271_93094211	0/0	t0218	10011	1	0	0	0	0	1	copy fasta	RGMA	chr15	93030271	93094211
RGMA_chr15_93030271_93094211	0/0	t0219	10010	1	1	0	0	0	0	copy fasta	RGMA	chr15	93030271	93094211
RGMA_chr15_93030271_93094211	0/0	t0220	10011	1	0	0	0	0	1	copy fasta	RGMA	chr15	93030271	93094211
RGMA_chr15_93030271_93094211	0/0	t0221	10051	1	1	0	0	0	0	copy fasta	RGMA	chr15	93030271	93094211
RGMA_chr15_93030271_93094211	0/0	t0222	10050	1	0	1	0	0	0	copy fasta	RGMA	chr15	93030271	93094211
RGMA_chr15_93030271_93094211	0/0	t0223	10065	1	1	0	0	0	0	copy fasta	RGMA	chr15	93030271	93094211
RGMA_chr15_93030271_93094211	0/0	t0224	10077	1	1	0	0	0	0	copy fasta	RGMA	chr15	93030271	93094211
RGMA_chr15_93030271_93094211	0/0	t0225	10026	1	1	0	0	0	0	copy fasta	RGMA	chr15	93030271	93094211
RGMA_chr15_93030271_93094211	0/0	t0226	10026	1	1	0	0	0	0	copy fasta	RGMA	chr15	93030271	93094211
RGMA_chr15_93030271_93094211	0/0	t0227	10055	1	0	1	0	0	0	copy fasta	RGMA	chr15	93030271	93094211
RGMA_chr15_93030271_93094211	0/0	t0228	10026	1	0	0	0	1	0	copy fasta	RGMA	chr15	93030271	93094211
RGMA_chr15_93030271_93094211	0/0	t0229	10011	1	0	0	0	0	1	copy fasta	RGMA	chr15	93030271	93094211
RGMA_chr15_93030271_93094211	0/0	t0230	10011	1	0	0	0	0	1	copy fasta	RGMA	chr15	93030271	93094211
RGMA_chr15_93030271_93094211	0/0	t0231	10011	1	0	0	1	0	0	copy fasta	RGMA	chr15	93030271	93094211
RGMB_chr5_98768663_98801494	0/0	t0001	3150	69	1	17	38	3	10	copy fasta	RGMB	chr5	98768663	98801494
RGMB_chr5_98768663_98801494	0/1	t0002	3152	30	6	7	14	0	2	copy fasta	RGMB	chr5	98768663	98801494
RGMB_chr5_98768663_98801494	0/0	t0003	3150	20	2	11	6	0	1	copy fasta	RGMB	chr5	98768663	98801494
RGMB_chr5_98768663_98801494	0/0	t0004	3148	15	5	0	9	0	1	copy fasta	RGMB	chr5	98768663	98801494
RGMB_chr5_98768663_98801494	1/0	t0005	3150	11	1	0	8	0	1	copy fasta	RGMB	chr5	98768663	98801494
RGMB_chr5_98768663_98801494	0/0	t0006	3151	11	0	2	7	0	2	copy fasta	RGMB	chr5	98768663	98801494