Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
B3GALT1_chr2_167288001_167879045	0/0	t0011	4867	2	1	1	0	0	0	copy fasta	B3GALT1	chr2	167288001	167879045
B3GALT1_chr2_167288001_167879045	0/0	t0012	4870	2	2	0	0	0	0	copy fasta	B3GALT1	chr2	167288001	167879045
B3GALT1_chr2_167288001_167879045	0/0	t0013	4869	2	0	0	2	0	0	copy fasta	B3GALT1	chr2	167288001	167879045
B3GALT1_chr2_167288001_167879045	0/0	t0014	4870	2	0	1	1	0	0	copy fasta	B3GALT1	chr2	167288001	167879045
B3GALT1_chr2_167288001_167879045	0/0	t0015	4869	2	2	0	0	0	0	copy fasta	B3GALT1	chr2	167288001	167879045
B3GALT1_chr2_167288001_167879045	0/0	t0016	4871	2	1	1	0	0	0	copy fasta	B3GALT1	chr2	167288001	167879045
B3GALT1_chr2_167288001_167879045	0/0	t0017	4870	2	1	0	0	0	1	copy fasta	B3GALT1	chr2	167288001	167879045
B3GALT1_chr2_167288001_167879045	0/0	t0018	4872	2	2	0	0	0	0	copy fasta	B3GALT1	chr2	167288001	167879045
B3GALT1_chr2_167288001_167879045	0/0	t0019	4869	2	0	0	2	0	0	copy fasta	B3GALT1	chr2	167288001	167879045
B3GALT1_chr2_167288001_167879045	0/0	t0020	4869	1	0	0	1	0	0	copy fasta	B3GALT1	chr2	167288001	167879045
B3GALT1_chr2_167288001_167879045	0/0	t0021	4865	1	1	0	0	0	0	copy fasta	B3GALT1	chr2	167288001	167879045
B3GALT1_chr2_167288001_167879045	0/0	t0022	4865	1	0	1	0	0	0	copy fasta	B3GALT1	chr2	167288001	167879045
B3GALT1_chr2_167288001_167879045	0/0	t0023	4856	1	0	1	0	0	0	copy fasta	B3GALT1	chr2	167288001	167879045
B3GALT1_chr2_167288001_167879045	0/0	t0024	4869	1	1	0	0	0	0	copy fasta	B3GALT1	chr2	167288001	167879045
B3GALT1_chr2_167288001_167879045	0/0	t0025	4870	1	1	0	0	0	0	copy fasta	B3GALT1	chr2	167288001	167879045
B3GALT1_chr2_167288001_167879045	0/0	t0026	4870	1	1	0	0	0	0	copy fasta	B3GALT1	chr2	167288001	167879045
B3GALT1_chr2_167288001_167879045	0/0	t0027	4868	1	1	0	0	0	0	copy fasta	B3GALT1	chr2	167288001	167879045
B3GALT1_chr2_167288001_167879045	0/0	t0028	4870	1	1	0	0	0	0	copy fasta	B3GALT1	chr2	167288001	167879045
B3GALT1_chr2_167288001_167879045	0/0	t0029	4870	1	1	0	0	0	0	copy fasta	B3GALT1	chr2	167288001	167879045
B3GALT1_chr2_167288001_167879045	0/0	t0030	4871	1	1	0	0	0	0	copy fasta	B3GALT1	chr2	167288001	167879045
B3GALT1_chr2_167288001_167879045	0/0	t0031	4866	1	0	1	0	0	0	copy fasta	B3GALT1	chr2	167288001	167879045
B3GALT1_chr2_167288001_167879045	0/0	t0032	4869	1	1	0	0	0	0	copy fasta	B3GALT1	chr2	167288001	167879045
B3GALT1_chr2_167288001_167879045	0/0	t0033	4872	1	0	0	1	0	0	copy fasta	B3GALT1	chr2	167288001	167879045
B3GALT1_chr2_167288001_167879045	0/0	t0034	4866	1	1	0	0	0	0	copy fasta	B3GALT1	chr2	167288001	167879045
B3GALT1_chr2_167288001_167879045	0/0	t0035	4865	1	1	0	0	0	0	copy fasta	B3GALT1	chr2	167288001	167879045
B3GALT1_chr2_167288001_167879045	0/0	t0036	4871	1	0	1	0	0	0	copy fasta	B3GALT1	chr2	167288001	167879045
B3GALT1_chr2_167288001_167879045	0/0	t0037	4872	1	1	0	0	0	0	copy fasta	B3GALT1	chr2	167288001	167879045
B3GALT1_chr2_167288001_167879045	0/0	t0038	4869	1	1	0	0	0	0	copy fasta	B3GALT1	chr2	167288001	167879045
B3GALT1_chr2_167288001_167879045	0/0	t0039	4871	1	1	0	0	0	0	copy fasta	B3GALT1	chr2	167288001	167879045
B3GALT1_chr2_167288001_167879045	0/0	t0040	4871	1	0	0	0	0	1	copy fasta	B3GALT1	chr2	167288001	167879045
B3GALT1_chr2_167288001_167879045	0/0	t0041	4880	1	1	0	0	0	0	copy fasta	B3GALT1	chr2	167288001	167879045
B3GALT1_chr2_167288001_167879045	0/0	t0042	4870	1	0	0	1	0	0	copy fasta	B3GALT1	chr2	167288001	167879045
B3GALT1_chr2_167288001_167879045	0/0	t0043	4871	1	0	1	0	0	0	copy fasta	B3GALT1	chr2	167288001	167879045
B3GALT1_chr2_167288001_167879045	0/0	t0044	4867	1	1	0	0	0	0	copy fasta	B3GALT1	chr2	167288001	167879045
B3GALT1_chr2_167288001_167879045	0/0	t0045	4870	1	1	0	0	0	0	copy fasta	B3GALT1	chr2	167288001	167879045
B3GALT1_chr2_167288001_167879045	0/0	t0046	4870	1	0	1	0	0	0	copy fasta	B3GALT1	chr2	167288001	167879045
B3GALT1_chr2_167288001_167879045	0/0	t0047	4872	1	0	0	0	0	1	copy fasta	B3GALT1	chr2	167288001	167879045
B3GALT1_chr2_167288001_167879045	0/0	t0048	4870	1	0	1	0	0	0	copy fasta	B3GALT1	chr2	167288001	167879045
B3GALT1_chr2_167288001_167879045	0/0	t0049	4870	1	0	0	1	0	0	copy fasta	B3GALT1	chr2	167288001	167879045
B3GALT1_chr2_167288001_167879045	0/0	t0050	4872	1	0	0	0	0	1	copy fasta	B3GALT1	chr2	167288001	167879045
B3GALT2_chr1_193173730_193191613	1/1	t0001	2280	328	71	63	149	13	30	copy fasta	B3GALT2	chr1	193173730	193191613
B3GALT2_chr1_193173730_193191613	0/0	t0002	2280	13	13	0	0	0	0	copy fasta	B3GALT2	chr1	193173730	193191613
B3GALT2_chr1_193173730_193191613	0/0	t0003	2280	13	6	6	0	1	0	copy fasta	B3GALT2	chr1	193173730	193191613
B3GALT2_chr1_193173730_193191613	0/0	t0004	2280	11	1	0	10	0	0	copy fasta	B3GALT2	chr1	193173730	193191613
B3GALT2_chr1_193173730_193191613	0/0	t0005	2280	10	0	5	5	0	0	copy fasta	B3GALT2	chr1	193173730	193191613
B3GALT2_chr1_193173730_193191613	0/0	t0006	2280	5	0	4	0	0	1	copy fasta	B3GALT2	chr1	193173730	193191613
B3GALT2_chr1_193173730_193191613	0/0	t0007	2276	3	1	0	0	0	2	copy fasta	B3GALT2	chr1	193173730	193191613
B3GALT2_chr1_193173730_193191613	0/0	t0008	2280	2	2	0	0	0	0	copy fasta	B3GALT2	chr1	193173730	193191613
B3GALT2_chr1_193173730_193191613	0/0	t0009	2280	2	0	0	2	0	0	copy fasta	B3GALT2	chr1	193173730	193191613
B3GALT2_chr1_193173730_193191613	0/0	t0010	2280	2	0	0	2	0	0	copy fasta	B3GALT2	chr1	193173730	193191613