JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RGMB_chr5_98768663_98801494	0/0	t0007	3151	11	0	1	10	0	0	copy fasta	RGMB	chr5	98768663	98801494
RGMB_chr5_98768663_98801494	0/0	t0008	3150	10	1	5	1	0	3	copy fasta	RGMB	chr5	98768663	98801494
RGMB_chr5_98768663_98801494	0/0	t0009	3153	10	4	1	3	0	2	copy fasta	RGMB	chr5	98768663	98801494
RGMB_chr5_98768663_98801494	0/0	t0010	3147	8	0	0	8	0	0	copy fasta	RGMB	chr5	98768663	98801494
RGMB_chr5_98768663_98801494	0/0	t0011	3151	8	8	0	0	0	0	copy fasta	RGMB	chr5	98768663	98801494
RGMB_chr5_98768663_98801494	0/0	t0012	3151	7	0	0	7	0	0	copy fasta	RGMB	chr5	98768663	98801494
RGMB_chr5_98768663_98801494	0/0	t0013	3151	6	5	1	0	0	0	copy fasta	RGMB	chr5	98768663	98801494
RGMB_chr5_98768663_98801494	0/0	t0014	3151	6	0	0	6	0	0	copy fasta	RGMB	chr5	98768663	98801494
RGMB_chr5_98768663_98801494	0/0	t0015	3151	6	6	0	0	0	0	copy fasta	RGMB	chr5	98768663	98801494
RGMB_chr5_98768663_98801494	0/0	t0016	3150	6	3	0	0	3	0	copy fasta	RGMB	chr5	98768663	98801494
RGMB_chr5_98768663_98801494	0/0	t0017	3152	5	0	1	2	0	2	copy fasta	RGMB	chr5	98768663	98801494
RGMB_chr5_98768663_98801494	0/0	t0018	3147	5	0	0	5	0	0	copy fasta	RGMB	chr5	98768663	98801494
RGMB_chr5_98768663_98801494	0/0	t0019	3150	5	4	1	0	0	0	copy fasta	RGMB	chr5	98768663	98801494
RGMB_chr5_98768663_98801494	0/0	t0020	3155	5	0	0	5	0	0	copy fasta	RGMB	chr5	98768663	98801494
RGMB_chr5_98768663_98801494	0/0	t0021	3151	5	1	1	0	1	2	copy fasta	RGMB	chr5	98768663	98801494
RGMB_chr5_98768663_98801494	0/0	t0022	3151	4	1	3	0	0	0	copy fasta	RGMB	chr5	98768663	98801494
RGMB_chr5_98768663_98801494	0/0	t0023	3149	4	4	0	0	0	0	copy fasta	RGMB	chr5	98768663	98801494
RGMB_chr5_98768663_98801494	0/0	t0024	3150	4	4	0	0	0	0	copy fasta	RGMB	chr5	98768663	98801494
RGMB_chr5_98768663_98801494	0/0	t0025	3152	4	1	2	1	0	0	copy fasta	RGMB	chr5	98768663	98801494
RGMB_chr5_98768663_98801494	0/0	t0026	3150	4	2	0	1	0	1	copy fasta	RGMB	chr5	98768663	98801494
RGMB_chr5_98768663_98801494	0/0	t0027	3150	3	0	0	3	0	0	copy fasta	RGMB	chr5	98768663	98801494
RGMB_chr5_98768663_98801494	0/0	t0028	3148	3	0	0	3	0	0	copy fasta	RGMB	chr5	98768663	98801494
RGMB_chr5_98768663_98801494	0/0	t0029	3152	3	0	0	0	3	0	copy fasta	RGMB	chr5	98768663	98801494
RGMB_chr5_98768663_98801494	0/0	t0030	3150	3	3	0	0	0	0	copy fasta	RGMB	chr5	98768663	98801494
RGMB_chr5_98768663_98801494	0/0	t0031	3151	3	3	0	0	0	0	copy fasta	RGMB	chr5	98768663	98801494
RGMB_chr5_98768663_98801494	0/0	t0032	3153	3	3	0	0	0	0	copy fasta	RGMB	chr5	98768663	98801494
RGMB_chr5_98768663_98801494	0/0	t0033	3153	3	0	0	0	0	3	copy fasta	RGMB	chr5	98768663	98801494
RGMB_chr5_98768663_98801494	0/0	t0034	3151	3	2	1	0	0	0	copy fasta	RGMB	chr5	98768663	98801494
RGMB_chr5_98768663_98801494	0/0	t0035	3152	2	0	0	0	0	2	copy fasta	RGMB	chr5	98768663	98801494
RGMB_chr5_98768663_98801494	0/0	t0036	3148	2	2	0	0	0	0	copy fasta	RGMB	chr5	98768663	98801494
RGMB_chr5_98768663_98801494	0/0	t0037	3150	2	2	0	0	0	0	copy fasta	RGMB	chr5	98768663	98801494
RGMB_chr5_98768663_98801494	0/0	t0038	3149	2	2	0	0	0	0	copy fasta	RGMB	chr5	98768663	98801494
RGMB_chr5_98768663_98801494	0/0	t0039	3151	2	2	0	0	0	0	copy fasta	RGMB	chr5	98768663	98801494
RGMB_chr5_98768663_98801494	0/0	t0040	3151	2	2	0	0	0	0	copy fasta	RGMB	chr5	98768663	98801494
RGMB_chr5_98768663_98801494	0/0	t0041	3148	2	2	0	0	0	0	copy fasta	RGMB	chr5	98768663	98801494
RGMB_chr5_98768663_98801494	0/0	t0042	3153	2	0	2	0	0	0	copy fasta	RGMB	chr5	98768663	98801494
RGMB_chr5_98768663_98801494	0/0	t0043	3150	2	1	1	0	0	0	copy fasta	RGMB	chr5	98768663	98801494
RGMB_chr5_98768663_98801494	0/0	t0044	3156	2	0	0	2	0	0	copy fasta	RGMB	chr5	98768663	98801494
RGMB_chr5_98768663_98801494	0/0	t0045	3150	2	0	2	0	0	0	copy fasta	RGMB	chr5	98768663	98801494
RGMB_chr5_98768663_98801494	0/0	t0046	3150	1	0	0	1	0	0	copy fasta	RGMB	chr5	98768663	98801494
RGMB_chr5_98768663_98801494	0/0	t0047	3150	1	0	0	1	0	0	copy fasta	RGMB	chr5	98768663	98801494
RGMB_chr5_98768663_98801494	0/0	t0048	3148	1	0	1	0	0	0	copy fasta	RGMB	chr5	98768663	98801494
RGMB_chr5_98768663_98801494	0/0	t0049	3150	1	0	1	0	0	0	copy fasta	RGMB	chr5	98768663	98801494
RGMB_chr5_98768663_98801494	0/0	t0050	3150	1	0	0	1	0	0	copy fasta	RGMB	chr5	98768663	98801494
RGMB_chr5_98768663_98801494	0/0	t0051	3120	1	0	0	1	0	0	copy fasta	RGMB	chr5	98768663	98801494
RGMB_chr5_98768663_98801494	0/0	t0052	3150	1	0	0	0	1	0	copy fasta	RGMB	chr5	98768663	98801494
RGMB_chr5_98768663_98801494	0/0	t0053	3149	1	1	0	0	0	0	copy fasta	RGMB	chr5	98768663	98801494
RGMB_chr5_98768663_98801494	0/0	t0054	3150	1	1	0	0	0	0	copy fasta	RGMB	chr5	98768663	98801494
RGMB_chr5_98768663_98801494	0/0	t0055	3151	1	0	0	0	0	1	copy fasta	RGMB	chr5	98768663	98801494
RGMB_chr5_98768663_98801494	0/0	t0056	3152	1	0	0	1	0	0	copy fasta	RGMB	chr5	98768663	98801494