JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RGMB_chr5_98768663_98801494	0/0	t0057	3150	1	0	1	0	0	0	copy fasta	RGMB	chr5	98768663	98801494
RGMB_chr5_98768663_98801494	0/0	t0058	3150	1	0	1	0	0	0	copy fasta	RGMB	chr5	98768663	98801494
RGMB_chr5_98768663_98801494	0/0	t0059	3153	1	0	0	0	0	1	copy fasta	RGMB	chr5	98768663	98801494
RGMB_chr5_98768663_98801494	0/0	t0060	3153	1	0	0	0	0	1	copy fasta	RGMB	chr5	98768663	98801494
RGMB_chr5_98768663_98801494	0/0	t0061	3150	1	0	0	0	0	1	copy fasta	RGMB	chr5	98768663	98801494
RGMB_chr5_98768663_98801494	0/0	t0062	3151	1	0	0	0	0	1	copy fasta	RGMB	chr5	98768663	98801494
RGMB_chr5_98768663_98801494	0/0	t0063	3151	1	1	0	0	0	0	copy fasta	RGMB	chr5	98768663	98801494
RGMB_chr5_98768663_98801494	0/0	t0064	3150	1	0	0	0	0	1	copy fasta	RGMB	chr5	98768663	98801494
RGMB_chr5_98768663_98801494	0/0	t0065	3153	1	0	0	0	1	0	copy fasta	RGMB	chr5	98768663	98801494
RGMB_chr5_98768663_98801494	0/0	t0066	3150	1	1	0	0	0	0	copy fasta	RGMB	chr5	98768663	98801494
RGMB_chr5_98768663_98801494	0/0	t0067	3151	1	1	0	0	0	0	copy fasta	RGMB	chr5	98768663	98801494
RGMB_chr5_98768663_98801494	0/0	t0068	3152	1	1	0	0	0	0	copy fasta	RGMB	chr5	98768663	98801494
RGMB_chr5_98768663_98801494	0/0	t0069	3153	1	0	1	0	0	0	copy fasta	RGMB	chr5	98768663	98801494
RGMB_chr5_98768663_98801494	0/0	t0070	3148	1	1	0	0	0	0	copy fasta	RGMB	chr5	98768663	98801494
RGMB_chr5_98768663_98801494	0/0	t0071	3152	1	0	1	0	0	0	copy fasta	RGMB	chr5	98768663	98801494
RGMB_chr5_98768663_98801494	0/0	t0072	3150	1	0	0	1	0	0	copy fasta	RGMB	chr5	98768663	98801494
RGMB_chr5_98768663_98801494	0/0	t0073	3148	1	1	0	0	0	0	copy fasta	RGMB	chr5	98768663	98801494
RGMB_chr5_98768663_98801494	0/0	t0074	3153	1	0	1	0	0	0	copy fasta	RGMB	chr5	98768663	98801494
RGMB_chr5_98768663_98801494	0/0	t0075	3152	1	0	1	0	0	0	copy fasta	RGMB	chr5	98768663	98801494
RGMB_chr5_98768663_98801494	0/0	t0076	3152	1	1	0	0	0	0	copy fasta	RGMB	chr5	98768663	98801494
RGMB_chr5_98768663_98801494	0/0	t0077	3152	1	0	1	0	0	0	copy fasta	RGMB	chr5	98768663	98801494
RGMB_chr5_98768663_98801494	0/0	t0078	3152	1	1	0	0	0	0	copy fasta	RGMB	chr5	98768663	98801494
RGMB_chr5_98768663_98801494	0/0	t0079	3150	1	0	0	0	0	1	copy fasta	RGMB	chr5	98768663	98801494
RGMB_chr5_98768663_98801494	0/0	t0080	3152	1	0	0	0	0	1	copy fasta	RGMB	chr5	98768663	98801494
RGMB_chr5_98768663_98801494	0/0	t0081	3150	1	0	0	0	0	1	copy fasta	RGMB	chr5	98768663	98801494
RGMB_chr5_98768663_98801494	0/0	t0082	3150	1	1	0	0	0	0	copy fasta	RGMB	chr5	98768663	98801494
RGMB_chr5_98768663_98801494	0/0	t0083	3153	1	0	1	0	0	0	copy fasta	RGMB	chr5	98768663	98801494
RGMB_chr5_98768663_98801494	0/0	t0084	3149	1	0	1	0	0	0	copy fasta	RGMB	chr5	98768663	98801494
RGMB_chr5_98768663_98801494	0/0	t0085	3151	1	0	0	0	0	1	copy fasta	RGMB	chr5	98768663	98801494
RGMB_chr5_98768663_98801494	0/0	t0086	3151	1	1	0	0	0	0	copy fasta	RGMB	chr5	98768663	98801494
RGMB_chr5_98768663_98801494	0/0	t0087	3150	1	0	0	1	0	0	copy fasta	RGMB	chr5	98768663	98801494
RGMB_chr5_98768663_98801494	0/0	t0088	3150	1	0	1	0	0	0	copy fasta	RGMB	chr5	98768663	98801494
RGMB_chr5_98768663_98801494	0/0	t0089	3147	1	0	0	1	0	0	copy fasta	RGMB	chr5	98768663	98801494
RGMB_chr5_98768663_98801494	0/0	t0090	3150	1	0	0	1	0	0	copy fasta	RGMB	chr5	98768663	98801494
RGMB_chr5_98768663_98801494	0/0	t0091	3152	1	0	1	0	0	0	copy fasta	RGMB	chr5	98768663	98801494
RGMB_chr5_98768663_98801494	0/0	t0092	3151	1	1	0	0	0	0	copy fasta	RGMB	chr5	98768663	98801494
RGMB_chr5_98768663_98801494	0/0	t0093	3152	1	0	1	0	0	0	copy fasta	RGMB	chr5	98768663	98801494
RGMB_chr5_98768663_98801494	0/0	t0094	3150	1	0	1	0	0	0	copy fasta	RGMB	chr5	98768663	98801494
RGMB_chr5_98768663_98801494	0/0	t0095	3150	1	1	0	0	0	0	copy fasta	RGMB	chr5	98768663	98801494
RGMB_chr5_98768663_98801494	0/0	t0096	3150	1	1	0	0	0	0	copy fasta	RGMB	chr5	98768663	98801494
RGN_chrX_47073443_47098313	1/1	t0001	1269	206	48	33	90	8	25	copy fasta	RGN	chrX	47073443	47098313
RGN_chrX_47073443_47098313	0/0	t0002	1269	52	0	15	34	2	1	copy fasta	RGN	chrX	47073443	47098313
RGN_chrX_47073443_47098313	0/0	t0003	1269	9	7	2	0	0	0	copy fasta	RGN	chrX	47073443	47098313
RGN_chrX_47073443_47098313	0/0	t0004	1269	7	0	3	0	1	3	copy fasta	RGN	chrX	47073443	47098313
RGN_chrX_47073443_47098313	0/0	t0005	1270	5	5	0	0	0	0	copy fasta	RGN	chrX	47073443	47098313
RGN_chrX_47073443_47098313	0/0	t0006	1269	5	0	0	5	0	0	copy fasta	RGN	chrX	47073443	47098313
RGN_chrX_47073443_47098313	0/0	t0007	1269	2	0	2	0	0	0	copy fasta	RGN	chrX	47073443	47098313
RGN_chrX_47073443_47098313	0/0	t0008	1269	2	2	0	0	0	0	copy fasta	RGN	chrX	47073443	47098313
RGN_chrX_47073443_47098313	0/0	t0009	1270	1	0	0	0	0	1	copy fasta	RGN	chrX	47073443	47098313
RGN_chrX_47073443_47098313	0/0	t0010	1268	1	0	0	1	0	0	copy fasta	RGN	chrX	47073443	47098313