JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RGN_chrX_47073443_47098313	0/0	t0011	1273	1	0	0	1	0	0	copy fasta	RGN	chrX	47073443	47098313
RGN_chrX_47073443_47098313	0/0	t0012	1269	1	1	0	0	0	0	copy fasta	RGN	chrX	47073443	47098313
RGN_chrX_47073443_47098313	0/0	t0013	1269	1	1	0	0	0	0	copy fasta	RGN	chrX	47073443	47098313
RGN_chrX_47073443_47098313	0/0	t0014	1268	1	1	0	0	0	0	copy fasta	RGN	chrX	47073443	47098313
RGN_chrX_47073443_47098313	0/0	t0015	1269	1	1	0	0	0	0	copy fasta	RGN	chrX	47073443	47098313
RGN_chrX_47073443_47098313	0/0	t0016	1270	1	0	0	1	0	0	copy fasta	RGN	chrX	47073443	47098313
RGN_chrX_47073443_47098313	0/0	t0017	1269	1	1	0	0	0	0	copy fasta	RGN	chrX	47073443	47098313
RGN_chrX_47073443_47098313	0/0	t0018	1269	1	0	1	0	0	0	copy fasta	RGN	chrX	47073443	47098313
RGN_chrX_47073443_47098313	0/0	t0019	1277	1	1	0	0	0	0	copy fasta	RGN	chrX	47073443	47098313
RGN_chrX_47073443_47098313	0/0	t0020	1269	1	0	1	0	0	0	copy fasta	RGN	chrX	47073443	47098313
RGN_chrX_47073443_47098313	0/0	t0021	1269	1	0	0	1	0	0	copy fasta	RGN	chrX	47073443	47098313
RGN_chrX_47073443_47098313	0/0	t0022	1271	1	0	0	1	0	0	copy fasta	RGN	chrX	47073443	47098313
RGN_chrX_47073443_47098313	0/0	t0023	1271	1	0	0	1	0	0	copy fasta	RGN	chrX	47073443	47098313
RGN_chrX_47073443_47098313	0/0	t0024	1269	1	0	0	1	0	0	copy fasta	RGN	chrX	47073443	47098313
RGP1_chr9_35744287_35763585	0/0	t0001	5853	102	5	16	73	2	6	copy fasta	RGP1	chr9	35744287	35763585
RGP1_chr9_35744287_35763585	1/0	t0002	5853	98	17	15	51	4	10	copy fasta	RGP1	chr9	35744287	35763585
RGP1_chr9_35744287_35763585	0/0	t0003	5853	74	4	12	40	4	14	copy fasta	RGP1	chr9	35744287	35763585
RGP1_chr9_35744287_35763585	0/0	t0004	5853	35	0	0	34	0	1	copy fasta	RGP1	chr9	35744287	35763585
RGP1_chr9_35744287_35763585	0/0	t0005	5853	28	1	16	8	0	3	copy fasta	RGP1	chr9	35744287	35763585
RGP1_chr9_35744287_35763585	0/0	t0006	5853	14	13	1	0	0	0	copy fasta	RGP1	chr9	35744287	35763585
RGP1_chr9_35744287_35763585	0/0	t0007	5853	12	11	1	0	0	0	copy fasta	RGP1	chr9	35744287	35763585
RGP1_chr9_35744287_35763585	0/0	t0008	5853	9	9	0	0	0	0	copy fasta	RGP1	chr9	35744287	35763585
RGP1_chr9_35744287_35763585	0/0	t0009	5853	7	5	2	0	0	0	copy fasta	RGP1	chr9	35744287	35763585
RGP1_chr9_35744287_35763585	0/0	t0010	5853	5	5	0	0	0	0	copy fasta	RGP1	chr9	35744287	35763585
RGP1_chr9_35744287_35763585	0/0	t0011	5853	4	4	0	0	0	0	copy fasta	RGP1	chr9	35744287	35763585
RGP1_chr9_35744287_35763585	0/0	t0012	5853	3	2	1	0	0	0	copy fasta	RGP1	chr9	35744287	35763585
RGP1_chr9_35744287_35763585	0/0	t0013	5853	3	0	0	0	0	3	copy fasta	RGP1	chr9	35744287	35763585
RGP1_chr9_35744287_35763585	0/0	t0014	5853	2	0	0	2	0	0	copy fasta	RGP1	chr9	35744287	35763585
RGP1_chr9_35744287_35763585	0/0	t0015	5853	2	0	1	0	0	1	copy fasta	RGP1	chr9	35744287	35763585
RGP1_chr9_35744287_35763585	0/0	t0016	5853	2	1	0	0	1	0	copy fasta	RGP1	chr9	35744287	35763585
RGP1_chr9_35744287_35763585	0/0	t0017	5852	2	2	0	0	0	0	copy fasta	RGP1	chr9	35744287	35763585
RGP1_chr9_35744287_35763585	0/1	t0018	5853	2	0	0	0	0	1	copy fasta	RGP1	chr9	35744287	35763585
RGP1_chr9_35744287_35763585	0/0	t0019	5853	2	2	0	0	0	0	copy fasta	RGP1	chr9	35744287	35763585
RGP1_chr9_35744287_35763585	0/0	t0020	5853	2	2	0	0	0	0	copy fasta	RGP1	chr9	35744287	35763585
RGP1_chr9_35744287_35763585	0/0	t0021	5853	1	1	0	0	0	0	copy fasta	RGP1	chr9	35744287	35763585
RGP1_chr9_35744287_35763585	0/0	t0022	5853	1	0	0	1	0	0	copy fasta	RGP1	chr9	35744287	35763585
RGP1_chr9_35744287_35763585	0/0	t0023	5864	1	0	0	1	0	0	copy fasta	RGP1	chr9	35744287	35763585
RGP1_chr9_35744287_35763585	0/0	t0024	5853	1	0	0	0	0	1	copy fasta	RGP1	chr9	35744287	35763585
RGP1_chr9_35744287_35763585	0/0	t0025	5853	1	0	0	1	0	0	copy fasta	RGP1	chr9	35744287	35763585
RGP1_chr9_35744287_35763585	0/0	t0026	5853	1	0	0	1	0	0	copy fasta	RGP1	chr9	35744287	35763585
RGP1_chr9_35744287_35763585	0/0	t0027	5853	1	0	1	0	0	0	copy fasta	RGP1	chr9	35744287	35763585
RGP1_chr9_35744287_35763585	0/0	t0028	5853	1	0	1	0	0	0	copy fasta	RGP1	chr9	35744287	35763585
RGP1_chr9_35744287_35763585	0/0	t0029	5853	1	0	0	0	0	1	copy fasta	RGP1	chr9	35744287	35763585
RGP1_chr9_35744287_35763585	0/0	t0030	5853	1	0	0	0	1	0	copy fasta	RGP1	chr9	35744287	35763585
RGP1_chr9_35744287_35763585	0/0	t0031	5853	1	1	0	0	0	0	copy fasta	RGP1	chr9	35744287	35763585
RGP1_chr9_35744287_35763585	0/0	t0032	5853	1	1	0	0	0	0	copy fasta	RGP1	chr9	35744287	35763585
RGP1_chr9_35744287_35763585	0/0	t0033	5853	1	0	0	0	0	1	copy fasta	RGP1	chr9	35744287	35763585
RGP1_chr9_35744287_35763585	0/0	t0034	5853	1	0	0	1	0	0	copy fasta	RGP1	chr9	35744287	35763585
RGP1_chr9_35744287_35763585	0/0	t0035	5853	1	1	0	0	0	0	copy fasta	RGP1	chr9	35744287	35763585
RGP1_chr9_35744287_35763585	0/0	t0036	5853	1	0	0	1	0	0	copy fasta	RGP1	chr9	35744287	35763585