JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RGS11_chr16_263307_280944	0/0	t0013	997	1	1	0	0	0	0	copy fasta	RGS11	chr16	263307	280944
RGS11_chr16_263307_280944	1/0	t0014	996	1	0	0	0	0	0	copy fasta	RGS11	chr16	263307	280944
RGS12_chr4_3288021_3444913	1/1	t0001	410	293	89	67	94	9	32	copy fasta	RGS12	chr4	3288021	3444913
RGS12_chr4_3288021_3444913	0/0	t0002	410	7	1	1	2	0	3	copy fasta	RGS12	chr4	3288021	3444913
RGS12_chr4_3288021_3444913	0/0	t0003	410	7	0	4	0	1	2	copy fasta	RGS12	chr4	3288021	3444913
RGS12_chr4_3288021_3444913	0/0	t0004	410	2	2	0	0	0	0	copy fasta	RGS12	chr4	3288021	3444913
RGS12_chr4_3288021_3444913	0/0	t0005	410	2	2	0	0	0	0	copy fasta	RGS12	chr4	3288021	3444913
RGS12_chr4_3288021_3444913	0/0	t0006	410	1	0	0	0	0	1	copy fasta	RGS12	chr4	3288021	3444913
RGS13_chr1_192631147_192665311	1/1	t0001	1075	186	67	33	58	5	21	copy fasta	RGS13	chr1	192631147	192665311
RGS13_chr1_192631147_192665311	0/0	t0002	1075	165	6	21	113	7	18	copy fasta	RGS13	chr1	192631147	192665311
RGS13_chr1_192631147_192665311	0/0	t0003	1075	31	9	1	19	0	2	copy fasta	RGS13	chr1	192631147	192665311
RGS13_chr1_192631147_192665311	0/0	t0004	1075	13	0	6	7	0	0	copy fasta	RGS13	chr1	192631147	192665311
RGS13_chr1_192631147_192665311	0/0	t0005	1075	10	2	3	0	2	3	copy fasta	RGS13	chr1	192631147	192665311
RGS13_chr1_192631147_192665311	0/0	t0006	1075	10	10	0	0	0	0	copy fasta	RGS13	chr1	192631147	192665311
RGS13_chr1_192631147_192665311	0/0	t0007	1075	1	0	1	0	0	0	copy fasta	RGS13	chr1	192631147	192665311
RGS13_chr1_192631147_192665311	0/0	t0008	1075	1	0	1	0	0	0	copy fasta	RGS13	chr1	192631147	192665311
RGS13_chr1_192631147_192665311	0/0	t0009	1075	1	0	1	0	0	0	copy fasta	RGS13	chr1	192631147	192665311
RGS13_chr1_192631147_192665311	0/0	t0010	1075	1	0	1	0	0	0	copy fasta	RGS13	chr1	192631147	192665311
RGS13_chr1_192631147_192665311	0/0	t0011	1075	1	0	0	1	0	0	copy fasta	RGS13	chr1	192631147	192665311
RGS14_chr5_177352924_177377596	1/1	t0001	623	396	90	78	163	18	45	copy fasta	RGS14	chr5	177352924	177377596
RGS14_chr5_177352924_177377596	0/0	t0002	623	7	7	0	0	0	0	copy fasta	RGS14	chr5	177352924	177377596
RGS14_chr5_177352924_177377596	0/0	t0003	620	5	0	0	5	0	0	copy fasta	RGS14	chr5	177352924	177377596
RGS14_chr5_177352924_177377596	0/0	t0004	623	3	0	2	1	0	0	copy fasta	RGS14	chr5	177352924	177377596
RGS14_chr5_177352924_177377596	0/0	t0005	619	3	3	0	0	0	0	copy fasta	RGS14	chr5	177352924	177377596
RGS14_chr5_177352924_177377596	0/0	t0006	623	1	0	0	1	0	0	copy fasta	RGS14	chr5	177352924	177377596
RGS14_chr5_177352924_177377596	0/0	t0007	623	1	0	0	0	0	1	copy fasta	RGS14	chr5	177352924	177377596
RGS14_chr5_177352924_177377596	0/0	t0008	623	1	0	0	1	0	0	copy fasta	RGS14	chr5	177352924	177377596
RGS14_chr5_177352924_177377596	0/0	t0009	623	1	0	0	1	0	0	copy fasta	RGS14	chr5	177352924	177377596
RGS16_chr1_182593623_182609389	0/0	t0001	1800	153	12	38	79	8	16	copy fasta	RGS16	chr1	182593623	182609389
RGS16_chr1_182593623_182609389	0/0	t0002	1800	86	19	17	33	3	14	copy fasta	RGS16	chr1	182593623	182609389
RGS16_chr1_182593623_182609389	0/0	t0003	1801	57	7	5	40	0	5	copy fasta	RGS16	chr1	182593623	182609389
RGS16_chr1_182593623_182609389	0/1	t0004	1799	49	4	11	24	4	5	copy fasta	RGS16	chr1	182593623	182609389
RGS16_chr1_182593623_182609389	0/0	t0005	1801	33	10	4	15	1	3	copy fasta	RGS16	chr1	182593623	182609389
RGS16_chr1_182593623_182609389	0/0	t0006	1802	16	8	0	8	0	0	copy fasta	RGS16	chr1	182593623	182609389
RGS16_chr1_182593623_182609389	0/0	t0007	1800	9	9	0	0	0	0	copy fasta	RGS16	chr1	182593623	182609389
RGS16_chr1_182593623_182609389	0/0	t0008	1802	5	5	0	0	0	0	copy fasta	RGS16	chr1	182593623	182609389
RGS16_chr1_182593623_182609389	0/0	t0009	1802	4	1	0	3	0	0	copy fasta	RGS16	chr1	182593623	182609389
RGS16_chr1_182593623_182609389	1/0	t0010	1800	3	2	0	0	0	0	copy fasta	RGS16	chr1	182593623	182609389
RGS16_chr1_182593623_182609389	0/0	t0011	1800	3	3	0	0	0	0	copy fasta	RGS16	chr1	182593623	182609389
RGS16_chr1_182593623_182609389	0/0	t0012	1800	3	1	2	0	0	0	copy fasta	RGS16	chr1	182593623	182609389
RGS16_chr1_182593623_182609389	0/0	t0013	1799	3	1	0	2	0	0	copy fasta	RGS16	chr1	182593623	182609389
RGS16_chr1_182593623_182609389	0/0	t0014	1798	2	0	0	0	0	2	copy fasta	RGS16	chr1	182593623	182609389
RGS16_chr1_182593623_182609389	0/0	t0015	1799	2	2	0	0	0	0	copy fasta	RGS16	chr1	182593623	182609389
RGS16_chr1_182593623_182609389	0/0	t0016	1800	2	0	0	2	0	0	copy fasta	RGS16	chr1	182593623	182609389
RGS16_chr1_182593623_182609389	0/0	t0017	1800	1	0	0	0	0	1	copy fasta	RGS16	chr1	182593623	182609389
RGS16_chr1_182593623_182609389	0/0	t0018	1802	1	1	0	0	0	0	copy fasta	RGS16	chr1	182593623	182609389
RGS16_chr1_182593623_182609389	0/0	t0019	1801	1	1	0	0	0	0	copy fasta	RGS16	chr1	182593623	182609389
RGS16_chr1_182593623_182609389	0/0	t0020	1800	1	1	0	0	0	0	copy fasta	RGS16	chr1	182593623	182609389
RGS16_chr1_182593623_182609389	0/0	t0021	1800	1	1	0	0	0	0	copy fasta	RGS16	chr1	182593623	182609389
RGS16_chr1_182593623_182609389	0/0	t0022	1800	1	0	0	1	0	0	copy fasta	RGS16	chr1	182593623	182609389