JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RGS16_chr1_182593623_182609389	0/0	t0023	1800	1	0	0	1	0	0	copy fasta	RGS16	chr1	182593623	182609389
RGS16_chr1_182593623_182609389	0/0	t0024	1800	1	1	0	0	0	0	copy fasta	RGS16	chr1	182593623	182609389
RGS16_chr1_182593623_182609389	0/0	t0025	1799	1	0	0	1	0	0	copy fasta	RGS16	chr1	182593623	182609389
RGS16_chr1_182593623_182609389	0/0	t0026	1797	1	0	1	0	0	0	copy fasta	RGS16	chr1	182593623	182609389
RGS16_chr1_182593623_182609389	0/0	t0027	1799	1	1	0	0	0	0	copy fasta	RGS16	chr1	182593623	182609389
RGS16_chr1_182593623_182609389	0/0	t0028	1800	1	0	0	1	0	0	copy fasta	RGS16	chr1	182593623	182609389
RGS17_chr6_152999459_153136282	0/0	t0001	7303	72	12	17	33	1	9	copy fasta	RGS17	chr6	152999459	153136282
RGS17_chr6_152999459_153136282	1/0	t0002	7300	71	2	23	34	3	8	copy fasta	RGS17	chr6	152999459	153136282
RGS17_chr6_152999459_153136282	0/0	t0003	7303	33	1	11	17	3	1	copy fasta	RGS17	chr6	152999459	153136282
RGS17_chr6_152999459_153136282	0/0	t0004	7303	27	9	2	12	0	4	copy fasta	RGS17	chr6	152999459	153136282
RGS17_chr6_152999459_153136282	0/0	t0005	7304	18	5	9	1	0	3	copy fasta	RGS17	chr6	152999459	153136282
RGS17_chr6_152999459_153136282	0/0	t0006	7303	15	7	0	8	0	0	copy fasta	RGS17	chr6	152999459	153136282
RGS17_chr6_152999459_153136282	0/0	t0007	7303	9	9	0	0	0	0	copy fasta	RGS17	chr6	152999459	153136282
RGS17_chr6_152999459_153136282	0/0	t0008	7300	8	0	1	3	0	4	copy fasta	RGS17	chr6	152999459	153136282
RGS17_chr6_152999459_153136282	0/1	t0009	7303	7	1	0	0	1	4	copy fasta	RGS17	chr6	152999459	153136282
RGS17_chr6_152999459_153136282	0/0	t0010	7302	7	7	0	0	0	0	copy fasta	RGS17	chr6	152999459	153136282
RGS17_chr6_152999459_153136282	0/0	t0011	7305	5	5	0	0	0	0	copy fasta	RGS17	chr6	152999459	153136282
RGS17_chr6_152999459_153136282	0/0	t0012	7303	5	5	0	0	0	0	copy fasta	RGS17	chr6	152999459	153136282
RGS17_chr6_152999459_153136282	0/0	t0013	7300	4	0	1	3	0	0	copy fasta	RGS17	chr6	152999459	153136282
RGS17_chr6_152999459_153136282	0/0	t0014	7300	4	0	0	4	0	0	copy fasta	RGS17	chr6	152999459	153136282
RGS17_chr6_152999459_153136282	0/0	t0015	7299	4	0	1	3	0	0	copy fasta	RGS17	chr6	152999459	153136282
RGS17_chr6_152999459_153136282	0/0	t0016	7305	3	3	0	0	0	0	copy fasta	RGS17	chr6	152999459	153136282
RGS17_chr6_152999459_153136282	0/0	t0017	7298	3	3	0	0	0	0	copy fasta	RGS17	chr6	152999459	153136282
RGS17_chr6_152999459_153136282	0/0	t0018	7300	3	3	0	0	0	0	copy fasta	RGS17	chr6	152999459	153136282
RGS17_chr6_152999459_153136282	0/0	t0019	7300	3	3	0	0	0	0	copy fasta	RGS17	chr6	152999459	153136282
RGS17_chr6_152999459_153136282	0/0	t0020	7304	2	0	0	2	0	0	copy fasta	RGS17	chr6	152999459	153136282
RGS17_chr6_152999459_153136282	0/0	t0021	7301	2	0	0	1	0	1	copy fasta	RGS17	chr6	152999459	153136282
RGS17_chr6_152999459_153136282	0/0	t0022	7303	2	0	0	0	2	0	copy fasta	RGS17	chr6	152999459	153136282
RGS17_chr6_152999459_153136282	0/0	t0023	7300	2	2	0	0	0	0	copy fasta	RGS17	chr6	152999459	153136282
RGS17_chr6_152999459_153136282	0/0	t0024	7300	2	2	0	0	0	0	copy fasta	RGS17	chr6	152999459	153136282
RGS17_chr6_152999459_153136282	0/0	t0025	7304	1	0	0	0	0	1	copy fasta	RGS17	chr6	152999459	153136282
RGS17_chr6_152999459_153136282	0/0	t0026	7304	1	0	1	0	0	0	copy fasta	RGS17	chr6	152999459	153136282
RGS17_chr6_152999459_153136282	0/0	t0027	7293	1	0	1	0	0	0	copy fasta	RGS17	chr6	152999459	153136282
RGS17_chr6_152999459_153136282	0/0	t0028	7305	1	1	0	0	0	0	copy fasta	RGS17	chr6	152999459	153136282
RGS17_chr6_152999459_153136282	0/0	t0029	7303	1	0	0	0	1	0	copy fasta	RGS17	chr6	152999459	153136282
RGS17_chr6_152999459_153136282	0/0	t0030	7303	1	0	0	1	0	0	copy fasta	RGS17	chr6	152999459	153136282
RGS17_chr6_152999459_153136282	0/0	t0031	7304	1	0	0	1	0	0	copy fasta	RGS17	chr6	152999459	153136282
RGS17_chr6_152999459_153136282	0/0	t0032	7303	1	0	0	0	0	1	copy fasta	RGS17	chr6	152999459	153136282
RGS17_chr6_152999459_153136282	0/0	t0033	7304	1	0	1	0	0	0	copy fasta	RGS17	chr6	152999459	153136282
RGS17_chr6_152999459_153136282	0/0	t0034	7303	1	0	0	1	0	0	copy fasta	RGS17	chr6	152999459	153136282
RGS17_chr6_152999459_153136282	0/0	t0035	7303	1	1	0	0	0	0	copy fasta	RGS17	chr6	152999459	153136282
RGS17_chr6_152999459_153136282	0/0	t0036	7299	1	0	0	1	0	0	copy fasta	RGS17	chr6	152999459	153136282
RGS17_chr6_152999459_153136282	0/0	t0037	7304	1	0	0	1	0	0	copy fasta	RGS17	chr6	152999459	153136282
RGS17_chr6_152999459_153136282	0/0	t0038	7300	1	0	0	0	1	0	copy fasta	RGS17	chr6	152999459	153136282
RGS17_chr6_152999459_153136282	0/0	t0039	7300	1	0	0	1	0	0	copy fasta	RGS17	chr6	152999459	153136282
RGS17_chr6_152999459_153136282	0/0	t0040	7304	1	1	0	0	0	0	copy fasta	RGS17	chr6	152999459	153136282
RGS17_chr6_152999459_153136282	0/0	t0041	7300	1	0	0	1	0	0	copy fasta	RGS17	chr6	152999459	153136282
RGS17_chr6_152999459_153136282	0/0	t0042	7303	1	1	0	0	0	0	copy fasta	RGS17	chr6	152999459	153136282
RGS17_chr6_152999459_153136282	0/0	t0043	7302	1	1	0	0	0	0	copy fasta	RGS17	chr6	152999459	153136282
RGS17_chr6_152999459_153136282	0/0	t0044	7299	1	0	0	1	0	0	copy fasta	RGS17	chr6	152999459	153136282