JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RGS17_chr6_152999459_153136282	0/0	t0045	7298	1	1	0	0	0	0	copy fasta	RGS17	chr6	152999459	153136282
RGS17_chr6_152999459_153136282	0/0	t0046	7300	1	1	0	0	0	0	copy fasta	RGS17	chr6	152999459	153136282
RGS17_chr6_152999459_153136282	0/0	t0047	7299	1	1	0	0	0	0	copy fasta	RGS17	chr6	152999459	153136282
RGS17_chr6_152999459_153136282	0/0	t0048	7304	1	1	0	0	0	0	copy fasta	RGS17	chr6	152999459	153136282
RGS17_chr6_152999459_153136282	0/0	t0049	7303	1	1	0	0	0	0	copy fasta	RGS17	chr6	152999459	153136282
RGS17_chr6_152999459_153136282	0/0	t0050	7303	1	1	0	0	0	0	copy fasta	RGS17	chr6	152999459	153136282
RGS17_chr6_152999459_153136282	0/0	t0051	7303	1	0	0	1	0	0	copy fasta	RGS17	chr6	152999459	153136282
RGS18_chr1_192153462_192190815	1/1	t0001	1438	171	48	26	72	4	19	copy fasta	RGS18	chr1	192153462	192190815
RGS18_chr1_192153462_192190815	0/0	t0002	1438	139	18	26	76	6	13	copy fasta	RGS18	chr1	192153462	192190815
RGS18_chr1_192153462_192190815	0/0	t0003	1438	17	0	0	17	0	0	copy fasta	RGS18	chr1	192153462	192190815
RGS18_chr1_192153462_192190815	0/0	t0004	1438	3	0	2	0	0	1	copy fasta	RGS18	chr1	192153462	192190815
RGS18_chr1_192153462_192190815	0/0	t0005	1438	2	0	0	0	0	2	copy fasta	RGS18	chr1	192153462	192190815
RGS18_chr1_192153462_192190815	0/0	t0006	1438	1	0	0	1	0	0	copy fasta	RGS18	chr1	192153462	192190815
RGS18_chr1_192153462_192190815	0/0	t0007	1438	1	0	0	1	0	0	copy fasta	RGS18	chr1	192153462	192190815
RGS18_chr1_192153462_192190815	0/0	t0008	1438	1	0	0	1	0	0	copy fasta	RGS18	chr1	192153462	192190815
RGS18_chr1_192153462_192190815	0/0	t0009	1438	1	0	0	0	0	1	copy fasta	RGS18	chr1	192153462	192190815
RGS19_chr20_64068181_64084518	1/0	t0001	966	247	53	48	114	13	18	copy fasta	RGS19	chr20	64068181	64084518
RGS19_chr20_64068181_64084518	0/0	t0002	966	96	24	25	35	3	9	copy fasta	RGS19	chr20	64068181	64084518
RGS19_chr20_64068181_64084518	0/0	t0003	966	30	13	5	0	0	12	copy fasta	RGS19	chr20	64068181	64084518
RGS19_chr20_64068181_64084518	0/0	t0004	966	5	0	0	0	0	5	copy fasta	RGS19	chr20	64068181	64084518
RGS19_chr20_64068181_64084518	0/1	t0005	947	3	0	0	0	0	2	copy fasta	RGS19	chr20	64068181	64084518
RGS19_chr20_64068181_64084518	0/0	t0006	966	3	0	0	2	0	1	copy fasta	RGS19	chr20	64068181	64084518
RGS19_chr20_64068181_64084518	0/0	t0007	966	1	0	0	0	0	1	copy fasta	RGS19	chr20	64068181	64084518
RGS19_chr20_64068181_64084518	0/0	t0008	966	1	1	0	0	0	0	copy fasta	RGS19	chr20	64068181	64084518
RGS19_chr20_64068181_64084518	0/0	t0009	966	1	1	0	0	0	0	copy fasta	RGS19	chr20	64068181	64084518
RGS19_chr20_64068181_64084518	0/0	t0010	966	1	0	0	1	0	0	copy fasta	RGS19	chr20	64068181	64084518
RGS19_chr20_64068181_64084518	0/0	t0011	966	1	0	0	1	0	0	copy fasta	RGS19	chr20	64068181	64084518
RGS19_chr20_64068181_64084518	0/0	t0012	966	1	0	0	1	0	0	copy fasta	RGS19	chr20	64068181	64084518
RGS1_chr1_192570773_192585024	1/1	t0001	723	404	29	82	233	16	42	copy fasta	RGS1	chr1	192570773	192585024
RGS1_chr1_192570773_192585024	0/0	t0002	723	49	39	6	0	2	2	copy fasta	RGS1	chr1	192570773	192585024
RGS1_chr1_192570773_192585024	0/0	t0003	723	19	19	0	0	0	0	copy fasta	RGS1	chr1	192570773	192585024
RGS1_chr1_192570773_192585024	0/0	t0004	723	10	0	0	10	0	0	copy fasta	RGS1	chr1	192570773	192585024
RGS1_chr1_192570773_192585024	0/0	t0005	723	7	7	0	0	0	0	copy fasta	RGS1	chr1	192570773	192585024
RGS1_chr1_192570773_192585024	0/0	t0006	723	2	2	0	0	0	0	copy fasta	RGS1	chr1	192570773	192585024
RGS1_chr1_192570773_192585024	0/0	t0007	723	1	0	0	1	0	0	copy fasta	RGS1	chr1	192570773	192585024
RGS20_chr8_53846795_53964303	0/1	t0001	951	117	12	14	80	1	9	copy fasta	RGS20	chr8	53846795	53964303
RGS20_chr8_53846795_53964303	1/0	t0002	951	105	38	31	18	3	14	copy fasta	RGS20	chr8	53846795	53964303
RGS20_chr8_53846795_53964303	0/0	t0003	951	18	16	2	0	0	0	copy fasta	RGS20	chr8	53846795	53964303
RGS20_chr8_53846795_53964303	0/0	t0004	951	5	4	1	0	0	0	copy fasta	RGS20	chr8	53846795	53964303
RGS20_chr8_53846795_53964303	0/0	t0005	951	3	2	1	0	0	0	copy fasta	RGS20	chr8	53846795	53964303
RGS20_chr8_53846795_53964303	0/0	t0006	947	2	1	1	0	0	0	copy fasta	RGS20	chr8	53846795	53964303
RGS20_chr8_53846795_53964303	0/0	t0007	951	2	0	2	0	0	0	copy fasta	RGS20	chr8	53846795	53964303
RGS20_chr8_53846795_53964303	0/0	t0008	947	2	2	0	0	0	0	copy fasta	RGS20	chr8	53846795	53964303
RGS20_chr8_53846795_53964303	0/0	t0009	951	2	0	0	1	0	1	copy fasta	RGS20	chr8	53846795	53964303
RGS20_chr8_53846795_53964303	0/0	t0010	951	1	0	0	1	0	0	copy fasta	RGS20	chr8	53846795	53964303
RGS20_chr8_53846795_53964303	0/0	t0011	951	1	1	0	0	0	0	copy fasta	RGS20	chr8	53846795	53964303
RGS21_chr1_192311992_192372285	1/0	t0001	1336	136	26	20	66	5	18	copy fasta	RGS21	chr1	192311992	192372285
RGS21_chr1_192311992_192372285	0/0	t0002	1340	92	44	13	25	1	9	copy fasta	RGS21	chr1	192311992	192372285
RGS21_chr1_192311992_192372285	0/1	t0003	1359	58	5	18	22	0	12	copy fasta	RGS21	chr1	192311992	192372285
RGS21_chr1_192311992_192372285	0/0	t0004	1340	3	3	0	0	0	0	copy fasta	RGS21	chr1	192311992	192372285