JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RGS21_chr1_192311992_192372285	0/0	t0005	1340	3	3	0	0	0	0	copy fasta	RGS21	chr1	192311992	192372285
RGS21_chr1_192311992_192372285	0/0	t0006	1340	3	3	0	0	0	0	copy fasta	RGS21	chr1	192311992	192372285
RGS21_chr1_192311992_192372285	0/0	t0007	1340	1	1	0	0	0	0	copy fasta	RGS21	chr1	192311992	192372285
RGS21_chr1_192311992_192372285	0/0	t0008	1336	1	0	0	1	0	0	copy fasta	RGS21	chr1	192311992	192372285
RGS21_chr1_192311992_192372285	0/0	t0009	1336	1	0	1	0	0	0	copy fasta	RGS21	chr1	192311992	192372285
RGS21_chr1_192311992_192372285	0/0	t0010	1340	1	0	1	0	0	0	copy fasta	RGS21	chr1	192311992	192372285
RGS21_chr1_192311992_192372285	0/0	t0011	1340	1	1	0	0	0	0	copy fasta	RGS21	chr1	192311992	192372285
RGS21_chr1_192311992_192372285	0/0	t0012	1340	1	0	1	0	0	0	copy fasta	RGS21	chr1	192311992	192372285
RGS21_chr1_192311992_192372285	0/0	t0013	1359	1	0	0	0	0	1	copy fasta	RGS21	chr1	192311992	192372285
RGS22_chr8_99955936_100111049	1/1	t0001	435	291	66	48	134	8	33	copy fasta	RGS22	chr8	99955936	100111049
RGS22_chr8_99955936_100111049	0/0	t0002	435	15	12	3	0	0	0	copy fasta	RGS22	chr8	99955936	100111049
RGS22_chr8_99955936_100111049	0/0	t0003	435	2	1	1	0	0	0	copy fasta	RGS22	chr8	99955936	100111049
RGS22_chr8_99955936_100111049	0/0	t0004	435	1	0	0	0	0	1	copy fasta	RGS22	chr8	99955936	100111049
RGS22_chr8_99955936_100111049	0/0	t0005	435	1	1	0	0	0	0	copy fasta	RGS22	chr8	99955936	100111049
RGS2_chr1_192804039_192817275	1/1	t0001	713	256	66	42	106	13	27	copy fasta	RGS2	chr1	192804039	192817275
RGS2_chr1_192804039_192817275	0/0	t0002	713	138	29	21	68	5	15	copy fasta	RGS2	chr1	192804039	192817275
RGS2_chr1_192804039_192817275	0/0	t0003	709	15	0	8	7	0	0	copy fasta	RGS2	chr1	192804039	192817275
RGS2_chr1_192804039_192817275	0/0	t0004	713	10	0	0	10	0	0	copy fasta	RGS2	chr1	192804039	192817275
RGS2_chr1_192804039_192817275	0/0	t0005	713	9	0	0	9	0	0	copy fasta	RGS2	chr1	192804039	192817275
RGS2_chr1_192804039_192817275	0/0	t0006	713	2	1	1	0	0	0	copy fasta	RGS2	chr1	192804039	192817275
RGS3_chr9_113458727_113602738	0/1	t0001	862	109	32	24	36	2	14	copy fasta	RGS3	chr9	113458727	113602738
RGS3_chr9_113458727_113602738	1/0	t0002	862	30	15	8	0	3	3	copy fasta	RGS3	chr9	113458727	113602738
RGS3_chr9_113458727_113602738	0/0	t0003	862	13	11	2	0	0	0	copy fasta	RGS3	chr9	113458727	113602738
RGS3_chr9_113458727_113602738	0/0	t0004	862	6	0	1	3	1	1	copy fasta	RGS3	chr9	113458727	113602738
RGS3_chr9_113458727_113602738	0/0	t0005	862	4	0	2	0	2	0	copy fasta	RGS3	chr9	113458727	113602738
RGS3_chr9_113458727_113602738	0/0	t0006	862	4	3	1	0	0	0	copy fasta	RGS3	chr9	113458727	113602738
RGS3_chr9_113458727_113602738	0/0	t0007	862	1	0	0	1	0	0	copy fasta	RGS3	chr9	113458727	113602738
RGS3_chr9_113458727_113602738	0/0	t0008	862	1	1	0	0	0	0	copy fasta	RGS3	chr9	113458727	113602738
RGS4_chr1_163064361_163081802	0/1	t0001	2362	254	39	51	118	13	32	copy fasta	RGS4	chr1	163064361	163081802
RGS4_chr1_163064361_163081802	0/0	t0002	2362	92	3	15	61	3	10	copy fasta	RGS4	chr1	163064361	163081802
RGS4_chr1_163064361_163081802	0/0	t0003	2363	15	15	0	0	0	0	copy fasta	RGS4	chr1	163064361	163081802
RGS4_chr1_163064361_163081802	0/0	t0004	2360	12	0	5	2	0	5	copy fasta	RGS4	chr1	163064361	163081802
RGS4_chr1_163064361_163081802	0/0	t0005	2363	7	7	0	0	0	0	copy fasta	RGS4	chr1	163064361	163081802
RGS4_chr1_163064361_163081802	0/0	t0006	2362	6	0	0	6	0	0	copy fasta	RGS4	chr1	163064361	163081802
RGS4_chr1_163064361_163081802	1/0	t0007	2367	6	4	1	0	0	0	copy fasta	RGS4	chr1	163064361	163081802
RGS4_chr1_163064361_163081802	0/0	t0008	2358	6	0	5	1	0	0	copy fasta	RGS4	chr1	163064361	163081802
RGS4_chr1_163064361_163081802	0/0	t0009	2364	4	1	0	3	0	0	copy fasta	RGS4	chr1	163064361	163081802
RGS4_chr1_163064361_163081802	0/0	t0010	2369	3	3	0	0	0	0	copy fasta	RGS4	chr1	163064361	163081802
RGS4_chr1_163064361_163081802	0/0	t0011	2367	3	3	0	0	0	0	copy fasta	RGS4	chr1	163064361	163081802
RGS4_chr1_163064361_163081802	0/0	t0012	2362	3	0	0	3	0	0	copy fasta	RGS4	chr1	163064361	163081802
RGS4_chr1_163064361_163081802	0/0	t0013	2358	3	3	0	0	0	0	copy fasta	RGS4	chr1	163064361	163081802
RGS4_chr1_163064361_163081802	0/0	t0014	2362	2	0	0	2	0	0	copy fasta	RGS4	chr1	163064361	163081802
RGS4_chr1_163064361_163081802	0/0	t0015	2365	2	2	0	0	0	0	copy fasta	RGS4	chr1	163064361	163081802
RGS4_chr1_163064361_163081802	0/0	t0016	2362	2	0	0	2	0	0	copy fasta	RGS4	chr1	163064361	163081802
RGS4_chr1_163064361_163081802	0/0	t0017	2363	2	2	0	0	0	0	copy fasta	RGS4	chr1	163064361	163081802
RGS4_chr1_163064361_163081802	0/0	t0018	2363	2	2	0	0	0	0	copy fasta	RGS4	chr1	163064361	163081802
RGS4_chr1_163064361_163081802	0/0	t0019	2363	2	2	0	0	0	0	copy fasta	RGS4	chr1	163064361	163081802
RGS4_chr1_163064361_163081802	0/0	t0020	2362	2	2	0	0	0	0	copy fasta	RGS4	chr1	163064361	163081802
RGS4_chr1_163064361_163081802	0/0	t0021	2360	2	0	0	0	0	2	copy fasta	RGS4	chr1	163064361	163081802
RGS4_chr1_163064361_163081802	0/0	t0022	2356	2	0	2	0	0	0	copy fasta	RGS4	chr1	163064361	163081802