JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RGS4_chr1_163064361_163081802	0/0	t0023	2358	2	0	0	2	0	0	copy fasta	RGS4	chr1	163064361	163081802
RGS4_chr1_163064361_163081802	0/0	t0024	2364	1	0	0	1	0	0	copy fasta	RGS4	chr1	163064361	163081802
RGS4_chr1_163064361_163081802	0/0	t0025	2363	1	0	0	1	0	0	copy fasta	RGS4	chr1	163064361	163081802
RGS4_chr1_163064361_163081802	0/0	t0026	2362	1	0	0	1	0	0	copy fasta	RGS4	chr1	163064361	163081802
RGS4_chr1_163064361_163081802	0/0	t0027	2358	1	0	0	1	0	0	copy fasta	RGS4	chr1	163064361	163081802
RGS4_chr1_163064361_163081802	0/0	t0028	2367	1	1	0	0	0	0	copy fasta	RGS4	chr1	163064361	163081802
RGS4_chr1_163064361_163081802	0/0	t0029	2367	1	1	0	0	0	0	copy fasta	RGS4	chr1	163064361	163081802
RGS4_chr1_163064361_163081802	0/0	t0030	2365	1	1	0	0	0	0	copy fasta	RGS4	chr1	163064361	163081802
RGS4_chr1_163064361_163081802	0/0	t0031	2364	1	1	0	0	0	0	copy fasta	RGS4	chr1	163064361	163081802
RGS4_chr1_163064361_163081802	0/0	t0032	2363	1	1	0	0	0	0	copy fasta	RGS4	chr1	163064361	163081802
RGS4_chr1_163064361_163081802	0/0	t0033	2362	1	0	0	1	0	0	copy fasta	RGS4	chr1	163064361	163081802
RGS4_chr1_163064361_163081802	0/0	t0034	2362	1	0	1	0	0	0	copy fasta	RGS4	chr1	163064361	163081802
RGS4_chr1_163064361_163081802	0/0	t0035	2362	1	1	0	0	0	0	copy fasta	RGS4	chr1	163064361	163081802
RGS4_chr1_163064361_163081802	0/0	t0036	2362	1	1	0	0	0	0	copy fasta	RGS4	chr1	163064361	163081802
RGS4_chr1_163064361_163081802	0/0	t0037	2362	1	0	0	1	0	0	copy fasta	RGS4	chr1	163064361	163081802
RGS4_chr1_163064361_163081802	0/0	t0038	2358	1	1	0	0	0	0	copy fasta	RGS4	chr1	163064361	163081802
RGS4_chr1_163064361_163081802	0/0	t0039	2362	1	0	0	0	0	1	copy fasta	RGS4	chr1	163064361	163081802
RGS5_chr1_163137299_163207916	0/0	t0001	5125	86	10	17	40	7	12	copy fasta	RGS5	chr1	163137299	163207916
RGS5_chr1_163137299_163207916	0/0	t0002	5125	73	27	4	32	0	10	copy fasta	RGS5	chr1	163137299	163207916
RGS5_chr1_163137299_163207916	0/0	t0003	5125	34	5	10	14	2	3	copy fasta	RGS5	chr1	163137299	163207916
RGS5_chr1_163137299_163207916	1/0	t0004	5125	27	3	11	9	1	2	copy fasta	RGS5	chr1	163137299	163207916
RGS5_chr1_163137299_163207916	0/0	t0005	5125	13	0	5	8	0	0	copy fasta	RGS5	chr1	163137299	163207916
RGS5_chr1_163137299_163207916	0/0	t0006	5125	12	0	5	1	1	5	copy fasta	RGS5	chr1	163137299	163207916
RGS5_chr1_163137299_163207916	0/0	t0007	5122	6	6	0	0	0	0	copy fasta	RGS5	chr1	163137299	163207916
RGS5_chr1_163137299_163207916	0/0	t0008	5125	5	5	0	0	0	0	copy fasta	RGS5	chr1	163137299	163207916
RGS5_chr1_163137299_163207916	0/0	t0009	5126	4	4	0	0	0	0	copy fasta	RGS5	chr1	163137299	163207916
RGS5_chr1_163137299_163207916	0/0	t0010	5125	4	0	0	0	0	4	copy fasta	RGS5	chr1	163137299	163207916
RGS5_chr1_163137299_163207916	0/0	t0011	5124	4	3	1	0	0	0	copy fasta	RGS5	chr1	163137299	163207916
RGS5_chr1_163137299_163207916	0/1	t0012	5125	3	0	1	0	1	0	copy fasta	RGS5	chr1	163137299	163207916
RGS5_chr1_163137299_163207916	0/0	t0013	5126	3	0	2	0	0	1	copy fasta	RGS5	chr1	163137299	163207916
RGS5_chr1_163137299_163207916	0/0	t0014	5125	3	0	0	3	0	0	copy fasta	RGS5	chr1	163137299	163207916
RGS5_chr1_163137299_163207916	0/0	t0015	5125	3	0	0	3	0	0	copy fasta	RGS5	chr1	163137299	163207916
RGS5_chr1_163137299_163207916	0/0	t0016	5125	3	3	0	0	0	0	copy fasta	RGS5	chr1	163137299	163207916
RGS5_chr1_163137299_163207916	0/0	t0017	5126	3	3	0	0	0	0	copy fasta	RGS5	chr1	163137299	163207916
RGS5_chr1_163137299_163207916	0/0	t0018	5125	3	3	0	0	0	0	copy fasta	RGS5	chr1	163137299	163207916
RGS5_chr1_163137299_163207916	0/0	t0019	5125	2	0	0	0	2	0	copy fasta	RGS5	chr1	163137299	163207916
RGS5_chr1_163137299_163207916	0/0	t0020	5125	2	0	0	0	0	2	copy fasta	RGS5	chr1	163137299	163207916
RGS5_chr1_163137299_163207916	0/0	t0021	5125	2	0	1	0	0	1	copy fasta	RGS5	chr1	163137299	163207916
RGS5_chr1_163137299_163207916	0/0	t0022	5126	1	0	1	0	0	0	copy fasta	RGS5	chr1	163137299	163207916
RGS5_chr1_163137299_163207916	0/0	t0023	5126	1	1	0	0	0	0	copy fasta	RGS5	chr1	163137299	163207916
RGS5_chr1_163137299_163207916	0/0	t0024	5125	1	0	0	1	0	0	copy fasta	RGS5	chr1	163137299	163207916
RGS5_chr1_163137299_163207916	0/0	t0025	5125	1	1	0	0	0	0	copy fasta	RGS5	chr1	163137299	163207916
RGS5_chr1_163137299_163207916	0/0	t0026	5125	1	1	0	0	0	0	copy fasta	RGS5	chr1	163137299	163207916
RGS5_chr1_163137299_163207916	0/0	t0027	5125	1	0	1	0	0	0	copy fasta	RGS5	chr1	163137299	163207916
RGS5_chr1_163137299_163207916	0/0	t0028	5125	1	0	0	1	0	0	copy fasta	RGS5	chr1	163137299	163207916
RGS5_chr1_163137299_163207916	0/0	t0029	5124	1	1	0	0	0	0	copy fasta	RGS5	chr1	163137299	163207916
RGS5_chr1_163137299_163207916	0/0	t0030	5125	1	0	0	1	0	0	copy fasta	RGS5	chr1	163137299	163207916
RGS5_chr1_163137299_163207916	0/0	t0031	5125	1	0	0	1	0	0	copy fasta	RGS5	chr1	163137299	163207916
RGS5_chr1_163137299_163207916	0/0	t0032	5125	1	0	0	1	0	0	copy fasta	RGS5	chr1	163137299	163207916
RGS5_chr1_163137299_163207916	0/0	t0033	5125	1	1	0	0	0	0	copy fasta	RGS5	chr1	163137299	163207916