JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RGS5_chr1_163137299_163207916	0/0	t0034	5125	1	1	0	0	0	0	copy fasta	RGS5	chr1	163137299	163207916
RGS5_chr1_163137299_163207916	0/0	t0035	5125	1	0	0	0	0	1	copy fasta	RGS5	chr1	163137299	163207916
RGS5_chr1_163137299_163207916	0/0	t0036	5125	1	0	1	0	0	0	copy fasta	RGS5	chr1	163137299	163207916
RGS5_chr1_163137299_163207916	0/0	t0037	5125	1	0	0	0	0	1	copy fasta	RGS5	chr1	163137299	163207916
RGS5_chr1_163137299_163207916	0/0	t0038	5126	1	0	0	1	0	0	copy fasta	RGS5	chr1	163137299	163207916
RGS5_chr1_163137299_163207916	0/0	t0039	5122	1	1	0	0	0	0	copy fasta	RGS5	chr1	163137299	163207916
RGS5_chr1_163137299_163207916	0/0	t0040	5126	1	1	0	0	0	0	copy fasta	RGS5	chr1	163137299	163207916
RGS5_chr1_163137299_163207916	0/0	t0041	5126	1	0	0	1	0	0	copy fasta	RGS5	chr1	163137299	163207916
RGS5_chr1_163137299_163207916	0/0	t0042	5125	1	1	0	0	0	0	copy fasta	RGS5	chr1	163137299	163207916
RGS5_chr1_163137299_163207916	0/0	t0043	5126	1	1	0	0	0	0	copy fasta	RGS5	chr1	163137299	163207916
RGS5_chr1_163137299_163207916	0/0	t0044	5122	1	1	0	0	0	0	copy fasta	RGS5	chr1	163137299	163207916
RGS5_chr1_163137299_163207916	0/0	t0045	5125	1	1	0	0	0	0	copy fasta	RGS5	chr1	163137299	163207916
RGS5_chr1_163137299_163207916	0/0	t0046	5125	1	1	0	0	0	0	copy fasta	RGS5	chr1	163137299	163207916
RGS5_chr1_163137299_163207916	0/0	t0047	5125	1	1	0	0	0	0	copy fasta	RGS5	chr1	163137299	163207916
RGS5_chr1_163137299_163207916	0/0	t0048	5125	1	0	0	1	0	0	copy fasta	RGS5	chr1	163137299	163207916
RGS6_chr14_71927429_72571530	0/0	t0001	4597	35	9	12	9	1	4	copy fasta	RGS6	chr14	71927429	72571530
RGS6_chr14_71927429_72571530	0/0	t0002	4599	10	5	3	2	0	0	copy fasta	RGS6	chr14	71927429	72571530
RGS6_chr14_71927429_72571530	0/0	t0003	4600	7	1	3	1	1	1	copy fasta	RGS6	chr14	71927429	72571530
RGS6_chr14_71927429_72571530	0/0	t0004	4599	6	6	0	0	0	0	copy fasta	RGS6	chr14	71927429	72571530
RGS6_chr14_71927429_72571530	0/0	t0005	4597	5	5	0	0	0	0	copy fasta	RGS6	chr14	71927429	72571530
RGS6_chr14_71927429_72571530	0/0	t0006	4596	4	4	0	0	0	0	copy fasta	RGS6	chr14	71927429	72571530
RGS6_chr14_71927429_72571530	0/0	t0007	4599	4	1	2	0	0	1	copy fasta	RGS6	chr14	71927429	72571530
RGS6_chr14_71927429_72571530	0/0	t0008	4599	3	3	0	0	0	0	copy fasta	RGS6	chr14	71927429	72571530
RGS6_chr14_71927429_72571530	0/0	t0009	4598	3	3	0	0	0	0	copy fasta	RGS6	chr14	71927429	72571530
RGS6_chr14_71927429_72571530	0/0	t0010	4598	3	3	0	0	0	0	copy fasta	RGS6	chr14	71927429	72571530
RGS6_chr14_71927429_72571530	0/0	t0011	4597	3	1	1	1	0	0	copy fasta	RGS6	chr14	71927429	72571530
RGS6_chr14_71927429_72571530	0/0	t0012	4597	3	3	0	0	0	0	copy fasta	RGS6	chr14	71927429	72571530
RGS6_chr14_71927429_72571530	0/0	t0013	4599	3	3	0	0	0	0	copy fasta	RGS6	chr14	71927429	72571530
RGS6_chr14_71927429_72571530	0/0	t0014	4600	3	3	0	0	0	0	copy fasta	RGS6	chr14	71927429	72571530
RGS6_chr14_71927429_72571530	0/0	t0015	4599	2	0	0	2	0	0	copy fasta	RGS6	chr14	71927429	72571530
RGS6_chr14_71927429_72571530	0/0	t0016	4596	2	1	1	0	0	0	copy fasta	RGS6	chr14	71927429	72571530
RGS6_chr14_71927429_72571530	0/0	t0017	4597	2	1	1	0	0	0	copy fasta	RGS6	chr14	71927429	72571530
RGS6_chr14_71927429_72571530	0/0	t0018	4597	2	2	0	0	0	0	copy fasta	RGS6	chr14	71927429	72571530
RGS6_chr14_71927429_72571530	0/0	t0019	4597	2	1	0	1	0	0	copy fasta	RGS6	chr14	71927429	72571530
RGS6_chr14_71927429_72571530	0/0	t0020	4597	2	2	0	0	0	0	copy fasta	RGS6	chr14	71927429	72571530
RGS6_chr14_71927429_72571530	0/0	t0021	4597	2	1	1	0	0	0	copy fasta	RGS6	chr14	71927429	72571530
RGS6_chr14_71927429_72571530	0/0	t0022	4598	2	2	0	0	0	0	copy fasta	RGS6	chr14	71927429	72571530
RGS6_chr14_71927429_72571530	0/0	t0023	4597	2	2	0	0	0	0	copy fasta	RGS6	chr14	71927429	72571530
RGS6_chr14_71927429_72571530	0/0	t0024	4597	2	1	1	0	0	0	copy fasta	RGS6	chr14	71927429	72571530
RGS6_chr14_71927429_72571530	0/0	t0025	4599	1	1	0	0	0	0	copy fasta	RGS6	chr14	71927429	72571530
RGS6_chr14_71927429_72571530	0/0	t0026	4599	1	0	0	1	0	0	copy fasta	RGS6	chr14	71927429	72571530
RGS6_chr14_71927429_72571530	0/0	t0027	4599	1	0	1	0	0	0	copy fasta	RGS6	chr14	71927429	72571530
RGS6_chr14_71927429_72571530	0/0	t0028	4598	1	1	0	0	0	0	copy fasta	RGS6	chr14	71927429	72571530
RGS6_chr14_71927429_72571530	0/0	t0029	4597	1	1	0	0	0	0	copy fasta	RGS6	chr14	71927429	72571530
RGS6_chr14_71927429_72571530	0/0	t0030	4597	1	1	0	0	0	0	copy fasta	RGS6	chr14	71927429	72571530
RGS6_chr14_71927429_72571530	0/0	t0031	4597	1	1	0	0	0	0	copy fasta	RGS6	chr14	71927429	72571530
RGS6_chr14_71927429_72571530	0/0	t0032	4597	1	0	0	0	0	1	copy fasta	RGS6	chr14	71927429	72571530
RGS6_chr14_71927429_72571530	0/0	t0033	4597	1	0	0	1	0	0	copy fasta	RGS6	chr14	71927429	72571530
RGS6_chr14_71927429_72571530	0/0	t0034	4597	1	0	1	0	0	0	copy fasta	RGS6	chr14	71927429	72571530
RGS6_chr14_71927429_72571530	0/0	t0035	4597	1	1	0	0	0	0	copy fasta	RGS6	chr14	71927429	72571530