JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RGS6_chr14_71927429_72571530	0/0	t0036	4599	1	0	1	0	0	0	copy fasta	RGS6	chr14	71927429	72571530
RGS6_chr14_71927429_72571530	0/0	t0037	4597	1	0	1	0	0	0	copy fasta	RGS6	chr14	71927429	72571530
RGS6_chr14_71927429_72571530	0/0	t0038	4597	1	1	0	0	0	0	copy fasta	RGS6	chr14	71927429	72571530
RGS6_chr14_71927429_72571530	0/0	t0039	4598	1	1	0	0	0	0	copy fasta	RGS6	chr14	71927429	72571530
RGS6_chr14_71927429_72571530	0/0	t0040	4597	1	1	0	0	0	0	copy fasta	RGS6	chr14	71927429	72571530
RGS6_chr14_71927429_72571530	0/0	t0041	4600	1	0	1	0	0	0	copy fasta	RGS6	chr14	71927429	72571530
RGS6_chr14_71927429_72571530	0/0	t0042	4599	1	0	0	0	0	1	copy fasta	RGS6	chr14	71927429	72571530
RGS7BP_chr5_64501015_64617319	0/0	t0001	3678	105	53	25	9	3	15	copy fasta	RGS7BP	chr5	64501015	64617319
RGS7BP_chr5_64501015_64617319	0/0	t0002	3677	61	11	14	26	2	8	copy fasta	RGS7BP	chr5	64501015	64617319
RGS7BP_chr5_64501015_64617319	1/0	t0003	3678	46	0	3	34	0	8	copy fasta	RGS7BP	chr5	64501015	64617319
RGS7BP_chr5_64501015_64617319	0/0	t0004	3678	35	7	11	16	0	1	copy fasta	RGS7BP	chr5	64501015	64617319
RGS7BP_chr5_64501015_64617319	0/0	t0005	3677	5	0	0	5	0	0	copy fasta	RGS7BP	chr5	64501015	64617319
RGS7BP_chr5_64501015_64617319	0/0	t0006	3678	4	4	0	0	0	0	copy fasta	RGS7BP	chr5	64501015	64617319
RGS7BP_chr5_64501015_64617319	0/0	t0007	3677	4	0	0	0	0	4	copy fasta	RGS7BP	chr5	64501015	64617319
RGS7BP_chr5_64501015_64617319	0/0	t0008	3678	2	1	1	0	0	0	copy fasta	RGS7BP	chr5	64501015	64617319
RGS7BP_chr5_64501015_64617319	0/0	t0009	3678	2	2	0	0	0	0	copy fasta	RGS7BP	chr5	64501015	64617319
RGS7BP_chr5_64501015_64617319	0/0	t0010	3677	2	0	2	0	0	0	copy fasta	RGS7BP	chr5	64501015	64617319
RGS7BP_chr5_64501015_64617319	0/0	t0011	3678	2	2	0	0	0	0	copy fasta	RGS7BP	chr5	64501015	64617319
RGS7BP_chr5_64501015_64617319	0/0	t0012	3678	2	0	2	0	0	0	copy fasta	RGS7BP	chr5	64501015	64617319
RGS7BP_chr5_64501015_64617319	0/0	t0013	3678	2	2	0	0	0	0	copy fasta	RGS7BP	chr5	64501015	64617319
RGS7BP_chr5_64501015_64617319	0/0	t0014	3677	1	0	0	0	0	1	copy fasta	RGS7BP	chr5	64501015	64617319
RGS7BP_chr5_64501015_64617319	0/0	t0015	3678	1	1	0	0	0	0	copy fasta	RGS7BP	chr5	64501015	64617319
RGS7BP_chr5_64501015_64617319	0/0	t0016	3677	1	0	1	0	0	0	copy fasta	RGS7BP	chr5	64501015	64617319
RGS7BP_chr5_64501015_64617319	0/0	t0017	3678	1	0	1	0	0	0	copy fasta	RGS7BP	chr5	64501015	64617319
RGS7BP_chr5_64501015_64617319	0/0	t0018	3677	1	0	0	0	0	1	copy fasta	RGS7BP	chr5	64501015	64617319
RGS7BP_chr5_64501015_64617319	0/1	t0019	3678	1	0	0	0	0	0	copy fasta	RGS7BP	chr5	64501015	64617319
RGS7BP_chr5_64501015_64617319	0/0	t0020	3678	1	0	0	0	1	0	copy fasta	RGS7BP	chr5	64501015	64617319
RGS7BP_chr5_64501015_64617319	0/0	t0021	3678	1	1	0	0	0	0	copy fasta	RGS7BP	chr5	64501015	64617319
RGS7_chr1_240770514_241362205	0/0	t0001	1064	64	29	17	6	3	9	copy fasta	RGS7	chr1	240770514	241362205
RGS7_chr1_240770514_241362205	0/0	t0002	1064	22	19	1	2	0	0	copy fasta	RGS7	chr1	240770514	241362205
RGS7_chr1_240770514_241362205	0/0	t0003	1064	8	6	0	1	0	1	copy fasta	RGS7	chr1	240770514	241362205
RGS7_chr1_240770514_241362205	0/0	t0004	1064	6	6	0	0	0	0	copy fasta	RGS7	chr1	240770514	241362205
RGS7_chr1_240770514_241362205	0/0	t0005	1064	5	3	0	1	1	0	copy fasta	RGS7	chr1	240770514	241362205
RGS7_chr1_240770514_241362205	0/0	t0006	1064	3	2	1	0	0	0	copy fasta	RGS7	chr1	240770514	241362205
RGS7_chr1_240770514_241362205	0/0	t0007	1064	1	1	0	0	0	0	copy fasta	RGS7	chr1	240770514	241362205
RGS7_chr1_240770514_241362205	0/0	t0008	1064	1	1	0	0	0	0	copy fasta	RGS7	chr1	240770514	241362205
RGS7_chr1_240770514_241362205	0/0	t0009	1064	1	0	1	0	0	0	copy fasta	RGS7	chr1	240770514	241362205
RGS7_chr1_240770514_241362205	0/0	t0010	1064	1	1	0	0	0	0	copy fasta	RGS7	chr1	240770514	241362205
RGS8_chr1_182636818_182689587	0/0	t0001	5446	70	12	14	32	4	8	copy fasta	RGS8	chr1	182636818	182689587
RGS8_chr1_182636818_182689587	1/0	t0002	5445	45	4	14	21	1	4	copy fasta	RGS8	chr1	182636818	182689587
RGS8_chr1_182636818_182689587	0/1	t0003	5445	25	9	2	11	1	1	copy fasta	RGS8	chr1	182636818	182689587
RGS8_chr1_182636818_182689587	0/0	t0004	5445	21	3	4	14	0	0	copy fasta	RGS8	chr1	182636818	182689587
RGS8_chr1_182636818_182689587	0/0	t0005	5447	13	0	1	6	0	6	copy fasta	RGS8	chr1	182636818	182689587
RGS8_chr1_182636818_182689587	0/0	t0006	5445	8	4	0	2	0	2	copy fasta	RGS8	chr1	182636818	182689587
RGS8_chr1_182636818_182689587	0/0	t0007	5447	8	7	1	0	0	0	copy fasta	RGS8	chr1	182636818	182689587
RGS8_chr1_182636818_182689587	0/0	t0008	5445	7	0	0	7	0	0	copy fasta	RGS8	chr1	182636818	182689587
RGS8_chr1_182636818_182689587	0/0	t0009	5444	7	2	0	5	0	0	copy fasta	RGS8	chr1	182636818	182689587
RGS8_chr1_182636818_182689587	0/0	t0010	5445	5	2	1	2	0	0	copy fasta	RGS8	chr1	182636818	182689587
RGS8_chr1_182636818_182689587	0/0	t0011	5447	5	3	2	0	0	0	copy fasta	RGS8	chr1	182636818	182689587
RGS8_chr1_182636818_182689587	0/0	t0012	5445	5	0	0	5	0	0	copy fasta	RGS8	chr1	182636818	182689587