JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RGS8_chr1_182636818_182689587	0/0	t0013	5445	4	4	0	0	0	0	copy fasta	RGS8	chr1	182636818	182689587
RGS8_chr1_182636818_182689587	0/0	t0014	5445	4	2	1	0	0	1	copy fasta	RGS8	chr1	182636818	182689587
RGS8_chr1_182636818_182689587	0/0	t0015	5445	3	0	1	0	1	1	copy fasta	RGS8	chr1	182636818	182689587
RGS8_chr1_182636818_182689587	0/0	t0016	5446	3	0	3	0	0	0	copy fasta	RGS8	chr1	182636818	182689587
RGS8_chr1_182636818_182689587	0/0	t0017	5446	3	3	0	0	0	0	copy fasta	RGS8	chr1	182636818	182689587
RGS8_chr1_182636818_182689587	0/0	t0018	5446	3	3	0	0	0	0	copy fasta	RGS8	chr1	182636818	182689587
RGS8_chr1_182636818_182689587	0/0	t0019	5445	2	2	0	0	0	0	copy fasta	RGS8	chr1	182636818	182689587
RGS8_chr1_182636818_182689587	0/0	t0020	5447	2	1	1	0	0	0	copy fasta	RGS8	chr1	182636818	182689587
RGS8_chr1_182636818_182689587	0/0	t0021	5445	2	2	0	0	0	0	copy fasta	RGS8	chr1	182636818	182689587
RGS8_chr1_182636818_182689587	0/0	t0022	5447	2	2	0	0	0	0	copy fasta	RGS8	chr1	182636818	182689587
RGS8_chr1_182636818_182689587	0/0	t0023	5446	2	0	0	0	0	2	copy fasta	RGS8	chr1	182636818	182689587
RGS8_chr1_182636818_182689587	0/0	t0024	5446	2	2	0	0	0	0	copy fasta	RGS8	chr1	182636818	182689587
RGS8_chr1_182636818_182689587	0/0	t0025	5445	2	1	1	0	0	0	copy fasta	RGS8	chr1	182636818	182689587
RGS8_chr1_182636818_182689587	0/0	t0026	5445	2	2	0	0	0	0	copy fasta	RGS8	chr1	182636818	182689587
RGS8_chr1_182636818_182689587	0/0	t0027	5446	2	0	0	2	0	0	copy fasta	RGS8	chr1	182636818	182689587
RGS8_chr1_182636818_182689587	0/0	t0028	5446	2	1	0	1	0	0	copy fasta	RGS8	chr1	182636818	182689587
RGS8_chr1_182636818_182689587	0/0	t0029	5446	2	0	1	1	0	0	copy fasta	RGS8	chr1	182636818	182689587
RGS8_chr1_182636818_182689587	0/0	t0030	5445	2	2	0	0	0	0	copy fasta	RGS8	chr1	182636818	182689587
RGS8_chr1_182636818_182689587	0/0	t0031	5446	1	0	0	1	0	0	copy fasta	RGS8	chr1	182636818	182689587
RGS8_chr1_182636818_182689587	0/0	t0032	5445	1	1	0	0	0	0	copy fasta	RGS8	chr1	182636818	182689587
RGS8_chr1_182636818_182689587	0/0	t0033	5446	1	0	0	1	0	0	copy fasta	RGS8	chr1	182636818	182689587
RGS8_chr1_182636818_182689587	0/0	t0034	5445	1	1	0	0	0	0	copy fasta	RGS8	chr1	182636818	182689587
RGS8_chr1_182636818_182689587	0/0	t0035	5446	1	0	0	1	0	0	copy fasta	RGS8	chr1	182636818	182689587
RGS8_chr1_182636818_182689587	0/0	t0036	5444	1	0	0	1	0	0	copy fasta	RGS8	chr1	182636818	182689587
RGS8_chr1_182636818_182689587	0/0	t0037	5446	1	1	0	0	0	0	copy fasta	RGS8	chr1	182636818	182689587
RGS8_chr1_182636818_182689587	0/0	t0038	5446	1	0	0	0	0	1	copy fasta	RGS8	chr1	182636818	182689587
RGS8_chr1_182636818_182689587	0/0	t0039	5447	1	0	0	1	0	0	copy fasta	RGS8	chr1	182636818	182689587
RGS8_chr1_182636818_182689587	0/0	t0040	5447	1	0	1	0	0	0	copy fasta	RGS8	chr1	182636818	182689587
RGS8_chr1_182636818_182689587	0/0	t0041	5445	1	0	0	1	0	0	copy fasta	RGS8	chr1	182636818	182689587
RGS8_chr1_182636818_182689587	0/0	t0042	5445	1	1	0	0	0	0	copy fasta	RGS8	chr1	182636818	182689587
RGS8_chr1_182636818_182689587	0/0	t0043	5446	1	1	0	0	0	0	copy fasta	RGS8	chr1	182636818	182689587
RGS8_chr1_182636818_182689587	0/0	t0044	5445	1	0	0	1	0	0	copy fasta	RGS8	chr1	182636818	182689587
RGS8_chr1_182636818_182689587	0/0	t0045	5446	1	0	1	0	0	0	copy fasta	RGS8	chr1	182636818	182689587
RGS8_chr1_182636818_182689587	0/0	t0046	5445	1	0	0	1	0	0	copy fasta	RGS8	chr1	182636818	182689587
RGS8_chr1_182636818_182689587	0/0	t0047	5446	1	0	0	1	0	0	copy fasta	RGS8	chr1	182636818	182689587
RGS8_chr1_182636818_182689587	0/0	t0048	5445	1	1	0	0	0	0	copy fasta	RGS8	chr1	182636818	182689587
RGS8_chr1_182636818_182689587	0/0	t0049	5445	1	1	0	0	0	0	copy fasta	RGS8	chr1	182636818	182689587
RGS8_chr1_182636818_182689587	0/0	t0050	5447	1	1	0	0	0	0	copy fasta	RGS8	chr1	182636818	182689587
RGS8_chr1_182636818_182689587	0/0	t0051	5447	1	0	1	0	0	0	copy fasta	RGS8	chr1	182636818	182689587
RGS8_chr1_182636818_182689587	0/0	t0052	5445	1	1	0	0	0	0	copy fasta	RGS8	chr1	182636818	182689587
RGS8_chr1_182636818_182689587	0/0	t0053	5447	1	1	0	0	0	0	copy fasta	RGS8	chr1	182636818	182689587
RGS8_chr1_182636818_182689587	0/0	t0054	5445	1	1	0	0	0	0	copy fasta	RGS8	chr1	182636818	182689587
RGS8_chr1_182636818_182689587	0/0	t0055	5446	1	0	0	1	0	0	copy fasta	RGS8	chr1	182636818	182689587
RGS8_chr1_182636818_182689587	0/0	t0056	5445	1	1	0	0	0	0	copy fasta	RGS8	chr1	182636818	182689587
RGS8_chr1_182636818_182689587	0/0	t0057	5446	1	0	0	0	1	0	copy fasta	RGS8	chr1	182636818	182689587
RGS8_chr1_182636818_182689587	0/0	t0058	5445	1	1	0	0	0	0	copy fasta	RGS8	chr1	182636818	182689587
RGS8_chr1_182636818_182689587	0/0	t0059	5445	1	1	0	0	0	0	copy fasta	RGS8	chr1	182636818	182689587
RGS8_chr1_182636818_182689587	0/0	t0060	5447	1	1	0	0	0	0	copy fasta	RGS8	chr1	182636818	182689587
RGS8_chr1_182636818_182689587	0/0	t0061	5447	1	1	0	0	0	0	copy fasta	RGS8	chr1	182636818	182689587
RGS8_chr1_182636818_182689587	0/0	t0062	5445	1	1	0	0	0	0	copy fasta	RGS8	chr1	182636818	182689587