JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RGS8_chr1_182636818_182689587	0/0	t0063	5447	1	0	0	1	0	0	copy fasta	RGS8	chr1	182636818	182689587
RGS8_chr1_182636818_182689587	0/0	t0064	5445	1	1	0	0	0	0	copy fasta	RGS8	chr1	182636818	182689587
RGS8_chr1_182636818_182689587	0/0	t0065	5446	1	1	0	0	0	0	copy fasta	RGS8	chr1	182636818	182689587
RGS8_chr1_182636818_182689587	0/0	t0066	5445	1	1	0	0	0	0	copy fasta	RGS8	chr1	182636818	182689587
RGS8_chr1_182636818_182689587	0/0	t0067	5445	1	1	0	0	0	0	copy fasta	RGS8	chr1	182636818	182689587
RGS9BP_chr19_32670848_32683300	0/1	t0001	1748	116	19	25	49	2	20	copy fasta	RGS9BP	chr19	32670848	32683300
RGS9BP_chr19_32670848_32683300	1/0	t0002	1746	112	5	22	66	6	12	copy fasta	RGS9BP	chr19	32670848	32683300
RGS9BP_chr19_32670848_32683300	0/0	t0003	1746	61	16	5	34	1	5	copy fasta	RGS9BP	chr19	32670848	32683300
RGS9BP_chr19_32670848_32683300	0/0	t0004	1747	24	0	3	19	1	1	copy fasta	RGS9BP	chr19	32670848	32683300
RGS9BP_chr19_32670848_32683300	0/0	t0005	1747	18	17	1	0	0	0	copy fasta	RGS9BP	chr19	32670848	32683300
RGS9BP_chr19_32670848_32683300	0/0	t0006	1746	18	3	1	13	1	0	copy fasta	RGS9BP	chr19	32670848	32683300
RGS9BP_chr19_32670848_32683300	0/0	t0007	1749	10	1	4	4	0	1	copy fasta	RGS9BP	chr19	32670848	32683300
RGS9BP_chr19_32670848_32683300	0/0	t0008	1746	9	0	0	9	0	0	copy fasta	RGS9BP	chr19	32670848	32683300
RGS9BP_chr19_32670848_32683300	0/0	t0009	1747	8	0	2	5	0	1	copy fasta	RGS9BP	chr19	32670848	32683300
RGS9BP_chr19_32670848_32683300	0/0	t0010	1745	7	7	0	0	0	0	copy fasta	RGS9BP	chr19	32670848	32683300
RGS9BP_chr19_32670848_32683300	0/0	t0011	1748	7	3	1	1	0	2	copy fasta	RGS9BP	chr19	32670848	32683300
RGS9BP_chr19_32670848_32683300	0/0	t0012	1746	6	6	0	0	0	0	copy fasta	RGS9BP	chr19	32670848	32683300
RGS9BP_chr19_32670848_32683300	0/0	t0013	1748	5	4	0	0	1	0	copy fasta	RGS9BP	chr19	32670848	32683300
RGS9BP_chr19_32670848_32683300	0/0	t0014	1747	5	0	1	3	1	0	copy fasta	RGS9BP	chr19	32670848	32683300
RGS9BP_chr19_32670848_32683300	0/0	t0015	1746	3	3	0	0	0	0	copy fasta	RGS9BP	chr19	32670848	32683300
RGS9BP_chr19_32670848_32683300	0/0	t0016	1748	3	0	0	0	2	1	copy fasta	RGS9BP	chr19	32670848	32683300
RGS9BP_chr19_32670848_32683300	0/0	t0017	1744	3	0	0	2	0	1	copy fasta	RGS9BP	chr19	32670848	32683300
RGS9BP_chr19_32670848_32683300	0/0	t0018	1747	2	2	0	0	0	0	copy fasta	RGS9BP	chr19	32670848	32683300
RGS9BP_chr19_32670848_32683300	0/0	t0019	1746	2	2	0	0	0	0	copy fasta	RGS9BP	chr19	32670848	32683300
RGS9BP_chr19_32670848_32683300	0/0	t0020	1746	2	0	1	0	0	1	copy fasta	RGS9BP	chr19	32670848	32683300
RGS9BP_chr19_32670848_32683300	0/0	t0021	1746	2	2	0	0	0	0	copy fasta	RGS9BP	chr19	32670848	32683300
RGS9BP_chr19_32670848_32683300	0/0	t0022	1746	2	0	0	2	0	0	copy fasta	RGS9BP	chr19	32670848	32683300
RGS9BP_chr19_32670848_32683300	0/0	t0023	1748	1	1	0	0	0	0	copy fasta	RGS9BP	chr19	32670848	32683300
RGS9BP_chr19_32670848_32683300	0/0	t0024	1749	1	0	1	0	0	0	copy fasta	RGS9BP	chr19	32670848	32683300
RGS9BP_chr19_32670848_32683300	0/0	t0025	1748	1	1	0	0	0	0	copy fasta	RGS9BP	chr19	32670848	32683300
RGS9BP_chr19_32670848_32683300	0/0	t0026	1747	1	0	0	1	0	0	copy fasta	RGS9BP	chr19	32670848	32683300
RGS9BP_chr19_32670848_32683300	0/0	t0027	1746	1	1	0	0	0	0	copy fasta	RGS9BP	chr19	32670848	32683300
RGS9BP_chr19_32670848_32683300	0/0	t0028	1747	1	1	0	0	0	0	copy fasta	RGS9BP	chr19	32670848	32683300
RGS9BP_chr19_32670848_32683300	0/0	t0029	1748	1	0	0	0	1	0	copy fasta	RGS9BP	chr19	32670848	32683300
RGS9BP_chr19_32670848_32683300	0/0	t0030	1748	1	0	1	0	0	0	copy fasta	RGS9BP	chr19	32670848	32683300
RGS9BP_chr19_32670848_32683300	0/0	t0031	1747	1	0	0	1	0	0	copy fasta	RGS9BP	chr19	32670848	32683300
RGS9BP_chr19_32670848_32683300	0/0	t0032	1746	1	0	1	0	0	0	copy fasta	RGS9BP	chr19	32670848	32683300
RGS9BP_chr19_32670848_32683300	0/0	t0033	1746	1	0	0	1	0	0	copy fasta	RGS9BP	chr19	32670848	32683300
RGS9BP_chr19_32670848_32683300	0/0	t0034	1746	1	0	1	0	0	0	copy fasta	RGS9BP	chr19	32670848	32683300
RGS9BP_chr19_32670848_32683300	0/0	t0035	1746	1	0	0	1	0	0	copy fasta	RGS9BP	chr19	32670848	32683300
RGS9BP_chr19_32670848_32683300	0/0	t0036	1746	1	1	0	0	0	0	copy fasta	RGS9BP	chr19	32670848	32683300
RGS9BP_chr19_32670848_32683300	0/0	t0037	1745	1	0	0	0	0	1	copy fasta	RGS9BP	chr19	32670848	32683300
RGS9BP_chr19_32670848_32683300	0/0	t0038	1747	1	0	0	1	0	0	copy fasta	RGS9BP	chr19	32670848	32683300
RGS9BP_chr19_32670848_32683300	0/0	t0039	1746	1	1	0	0	0	0	copy fasta	RGS9BP	chr19	32670848	32683300
RGS9BP_chr19_32670848_32683300	0/0	t0040	1746	1	0	0	1	0	0	copy fasta	RGS9BP	chr19	32670848	32683300
RGS9BP_chr19_32670848_32683300	0/0	t0041	1746	1	0	0	1	0	0	copy fasta	RGS9BP	chr19	32670848	32683300
RGS9_chr17_65132370_65232703	1/1	t0001	468	165	41	40	50	8	24	copy fasta	RGS9	chr17	65132370	65232703
RGS9_chr17_65132370_65232703	0/0	t0002	468	33	31	2	0	0	0	copy fasta	RGS9	chr17	65132370	65232703
RGS9_chr17_65132370_65232703	0/0	t0003	468	14	8	6	0	0	0	copy fasta	RGS9	chr17	65132370	65232703
RGS9_chr17_65132370_65232703	0/0	t0004	468	7	7	0	0	0	0	copy fasta	RGS9	chr17	65132370	65232703