JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RGS9_chr17_65132370_65232703	0/0	t0005	468	1	1	0	0	0	0	copy fasta	RGS9	chr17	65132370	65232703
RGS9_chr17_65132370_65232703	0/0	t0006	468	1	1	0	0	0	0	copy fasta	RGS9	chr17	65132370	65232703
RGS9_chr17_65132370_65232703	0/0	t0007	468	1	1	0	0	0	0	copy fasta	RGS9	chr17	65132370	65232703
RGSL1_chr1_182445146_182565597	1/1	t0001	505	295	78	50	125	14	26	copy fasta	RGSL1	chr1	182445146	182565597
RGSL1_chr1_182445146_182565597	0/0	t0002	505	43	8	10	21	0	4	copy fasta	RGSL1	chr1	182445146	182565597
RHAG_chr6_49600175_49641839	1/1	t0001	666	349	62	67	162	16	40	copy fasta	RHAG	chr6	49600175	49641839
RHAG_chr6_49600175_49641839	0/0	t0002	666	46	29	5	8	2	2	copy fasta	RHAG	chr6	49600175	49641839
RHAG_chr6_49600175_49641839	0/0	t0003	666	3	3	0	0	0	0	copy fasta	RHAG	chr6	49600175	49641839
RHAG_chr6_49600175_49641839	0/0	t0004	666	1	0	1	0	0	0	copy fasta	RHAG	chr6	49600175	49641839
RHAG_chr6_49600175_49641839	0/0	t0005	666	1	0	1	0	0	0	copy fasta	RHAG	chr6	49600175	49641839
RHBDD1_chr2_226831054_227004210	1/1	t0001	4114	165	21	19	97	5	21	copy fasta	RHBDD1	chr2	226831054	227004210
RHBDD1_chr2_226831054_227004210	0/0	t0002	4114	51	26	8	15	1	1	copy fasta	RHBDD1	chr2	226831054	227004210
RHBDD1_chr2_226831054_227004210	0/0	t0003	4114	16	2	7	2	2	3	copy fasta	RHBDD1	chr2	226831054	227004210
RHBDD1_chr2_226831054_227004210	0/0	t0004	4114	10	10	0	0	0	0	copy fasta	RHBDD1	chr2	226831054	227004210
RHBDD1_chr2_226831054_227004210	0/0	t0005	4112	3	3	0	0	0	0	copy fasta	RHBDD1	chr2	226831054	227004210
RHBDD1_chr2_226831054_227004210	0/0	t0006	4114	3	3	0	0	0	0	copy fasta	RHBDD1	chr2	226831054	227004210
RHBDD1_chr2_226831054_227004210	0/0	t0007	4114	2	0	0	2	0	0	copy fasta	RHBDD1	chr2	226831054	227004210
RHBDD1_chr2_226831054_227004210	0/0	t0008	4114	2	0	2	0	0	0	copy fasta	RHBDD1	chr2	226831054	227004210
RHBDD1_chr2_226831054_227004210	0/0	t0009	4114	2	2	0	0	0	0	copy fasta	RHBDD1	chr2	226831054	227004210
RHBDD1_chr2_226831054_227004210	0/0	t0010	4112	1	1	0	0	0	0	copy fasta	RHBDD1	chr2	226831054	227004210
RHBDD1_chr2_226831054_227004210	0/0	t0011	4114	1	0	1	0	0	0	copy fasta	RHBDD1	chr2	226831054	227004210
RHBDD1_chr2_226831054_227004210	0/0	t0012	4114	1	1	0	0	0	0	copy fasta	RHBDD1	chr2	226831054	227004210
RHBDD1_chr2_226831054_227004210	0/0	t0013	4114	1	1	0	0	0	0	copy fasta	RHBDD1	chr2	226831054	227004210
RHBDD1_chr2_226831054_227004210	0/0	t0014	4114	1	0	0	1	0	0	copy fasta	RHBDD1	chr2	226831054	227004210
RHBDD1_chr2_226831054_227004210	0/0	t0015	4114	1	0	0	0	0	1	copy fasta	RHBDD1	chr2	226831054	227004210
RHBDD1_chr2_226831054_227004210	0/0	t0016	4114	1	1	0	0	0	0	copy fasta	RHBDD1	chr2	226831054	227004210
RHBDD1_chr2_226831054_227004210	0/0	t0017	4075	1	0	0	1	0	0	copy fasta	RHBDD1	chr2	226831054	227004210
RHBDD1_chr2_226831054_227004210	0/0	t0018	4114	1	0	1	0	0	0	copy fasta	RHBDD1	chr2	226831054	227004210
RHBDD1_chr2_226831054_227004210	0/0	t0019	4114	1	1	0	0	0	0	copy fasta	RHBDD1	chr2	226831054	227004210
RHBDD2_chr7_75874034_75893926	1/0	t0001	627	278	69	59	106	11	32	copy fasta	RHBDD2	chr7	75874034	75893926
RHBDD2_chr7_75874034_75893926	0/1	t0002	627	87	8	10	47	5	16	copy fasta	RHBDD2	chr7	75874034	75893926
RHBDD2_chr7_75874034_75893926	0/0	t0003	627	13	13	0	0	0	0	copy fasta	RHBDD2	chr7	75874034	75893926
RHBDD2_chr7_75874034_75893926	0/0	t0004	627	3	0	0	3	0	0	copy fasta	RHBDD2	chr7	75874034	75893926
RHBDD2_chr7_75874034_75893926	0/0	t0005	627	3	3	0	0	0	0	copy fasta	RHBDD2	chr7	75874034	75893926
RHBDD2_chr7_75874034_75893926	0/0	t0006	627	2	2	0	0	0	0	copy fasta	RHBDD2	chr7	75874034	75893926
RHBDD2_chr7_75874034_75893926	0/0	t0007	627	1	0	0	1	0	0	copy fasta	RHBDD2	chr7	75874034	75893926
RHBDD2_chr7_75874034_75893926	0/0	t0008	627	1	0	0	1	0	0	copy fasta	RHBDD2	chr7	75874034	75893926
RHBDD2_chr7_75874034_75893926	0/0	t0009	627	1	1	0	0	0	0	copy fasta	RHBDD2	chr7	75874034	75893926
RHBDD2_chr7_75874034_75893926	0/0	t0010	627	1	0	0	1	0	0	copy fasta	RHBDD2	chr7	75874034	75893926
RHBDD2_chr7_75874034_75893926	0/0	t0011	627	1	1	0	0	0	0	copy fasta	RHBDD2	chr7	75874034	75893926
RHBDD2_chr7_75874034_75893926	0/0	t0012	627	1	0	0	1	0	0	copy fasta	RHBDD2	chr7	75874034	75893926
RHBDD2_chr7_75874034_75893926	0/0	t0013	627	1	1	0	0	0	0	copy fasta	RHBDD2	chr7	75874034	75893926
RHBDD2_chr7_75874034_75893926	0/0	t0014	627	1	0	1	0	0	0	copy fasta	RHBDD2	chr7	75874034	75893926
RHBDD3_chr22_29254872_29272981	1/1	t0001	617	443	93	78	208	18	44	copy fasta	RHBDD3	chr22	29254872	29272981
RHBDD3_chr22_29254872_29272981	0/0	t0002	617	3	1	2	0	0	0	copy fasta	RHBDD3	chr22	29254872	29272981
RHBDD3_chr22_29254872_29272981	0/0	t0003	617	2	0	0	0	0	2	copy fasta	RHBDD3	chr22	29254872	29272981
RHBDD3_chr22_29254872_29272981	0/0	t0004	617	1	0	0	1	0	0	copy fasta	RHBDD3	chr22	29254872	29272981
RHBDD3_chr22_29254872_29272981	0/0	t0005	617	1	1	0	0	0	0	copy fasta	RHBDD3	chr22	29254872	29272981
RHBDD3_chr22_29254872_29272981	0/0	t0006	617	1	1	0	0	0	0	copy fasta	RHBDD3	chr22	29254872	29272981
RHBDD3_chr22_29254872_29272981	0/0	t0007	617	1	0	0	1	0	0	copy fasta	RHBDD3	chr22	29254872	29272981