JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RHBDF1_chr16_53059_77631	0/1	t0001	430	358	91	74	135	16	41	copy fasta	RHBDF1	chr16	53059	77631
RHBDF1_chr16_53059_77631	0/0	t0002	447	25	0	1	17	2	5	copy fasta	RHBDF1	chr16	53059	77631
RHBDF1_chr16_53059_77631	0/0	t0003	430	5	5	0	0	0	0	copy fasta	RHBDF1	chr16	53059	77631
RHBDF1_chr16_53059_77631	0/0	t0004	464	3	0	0	3	0	0	copy fasta	RHBDF1	chr16	53059	77631
RHBDF1_chr16_53059_77631	0/0	t0005	430	2	2	0	0	0	0	copy fasta	RHBDF1	chr16	53059	77631
RHBDF1_chr16_53059_77631	0/0	t0006	481	1	0	0	1	0	0	copy fasta	RHBDF1	chr16	53059	77631
RHBDF1_chr16_53059_77631	1/0	t0007	425	1	0	0	0	0	0	copy fasta	RHBDF1	chr16	53059	77631
RHBDF1_chr16_53059_77631	0/0	t0008	430	1	0	1	0	0	0	copy fasta	RHBDF1	chr16	53059	77631
RHBDF1_chr16_53059_77631	0/0	t0009	429	1	0	0	1	0	0	copy fasta	RHBDF1	chr16	53059	77631
RHBDF1_chr16_53059_77631	0/0	t0010	430	1	0	0	1	0	0	copy fasta	RHBDF1	chr16	53059	77631
RHBDF2_chr17_76465896_76506423	0/0	t0001	1028	137	16	25	75	5	16	copy fasta	RHBDF2	chr17	76465896	76506423
RHBDF2_chr17_76465896_76506423	1/1	t0002	1028	96	35	25	17	4	13	copy fasta	RHBDF2	chr17	76465896	76506423
RHBDF2_chr17_76465896_76506423	0/0	t0003	1028	45	11	4	17	4	9	copy fasta	RHBDF2	chr17	76465896	76506423
RHBDF2_chr17_76465896_76506423	0/0	t0004	1028	29	2	2	23	0	2	copy fasta	RHBDF2	chr17	76465896	76506423
RHBDF2_chr17_76465896_76506423	0/0	t0005	1028	11	1	8	0	0	2	copy fasta	RHBDF2	chr17	76465896	76506423
RHBDF2_chr17_76465896_76506423	0/0	t0006	1028	10	0	6	0	1	3	copy fasta	RHBDF2	chr17	76465896	76506423
RHBDF2_chr17_76465896_76506423	0/0	t0007	1029	6	6	0	0	0	0	copy fasta	RHBDF2	chr17	76465896	76506423
RHBDF2_chr17_76465896_76506423	0/0	t0008	1028	6	6	0	0	0	0	copy fasta	RHBDF2	chr17	76465896	76506423
RHBDF2_chr17_76465896_76506423	0/0	t0009	1029	4	4	0	0	0	0	copy fasta	RHBDF2	chr17	76465896	76506423
RHBDF2_chr17_76465896_76506423	0/0	t0010	1027	3	2	1	0	0	0	copy fasta	RHBDF2	chr17	76465896	76506423
RHBDF2_chr17_76465896_76506423	0/0	t0011	1028	3	0	0	3	0	0	copy fasta	RHBDF2	chr17	76465896	76506423
RHBDF2_chr17_76465896_76506423	0/0	t0012	1029	2	1	1	0	0	0	copy fasta	RHBDF2	chr17	76465896	76506423
RHBDF2_chr17_76465896_76506423	0/0	t0013	1028	2	0	0	2	0	0	copy fasta	RHBDF2	chr17	76465896	76506423
RHBDF2_chr17_76465896_76506423	0/0	t0014	1028	1	0	0	1	0	0	copy fasta	RHBDF2	chr17	76465896	76506423
RHBDF2_chr17_76465896_76506423	0/0	t0015	1028	1	0	0	1	0	0	copy fasta	RHBDF2	chr17	76465896	76506423
RHBDF2_chr17_76465896_76506423	0/0	t0016	1028	1	0	0	1	0	0	copy fasta	RHBDF2	chr17	76465896	76506423
RHBDF2_chr17_76465896_76506423	0/0	t0017	1027	1	1	0	0	0	0	copy fasta	RHBDF2	chr17	76465896	76506423
RHBDF2_chr17_76465896_76506423	0/0	t0018	1028	1	1	0	0	0	0	copy fasta	RHBDF2	chr17	76465896	76506423
RHBDF2_chr17_76465896_76506423	0/0	t0019	1028	1	0	0	1	0	0	copy fasta	RHBDF2	chr17	76465896	76506423
RHBDF2_chr17_76465896_76506423	0/0	t0020	1028	1	0	0	0	0	1	copy fasta	RHBDF2	chr17	76465896	76506423
RHBDF2_chr17_76465896_76506423	0/0	t0021	1029	1	1	0	0	0	0	copy fasta	RHBDF2	chr17	76465896	76506423
RHBDF2_chr17_76465896_76506423	0/0	t0022	1028	1	1	0	0	0	0	copy fasta	RHBDF2	chr17	76465896	76506423
RHBDF2_chr17_76465896_76506423	0/0	t0023	1028	1	0	0	1	0	0	copy fasta	RHBDF2	chr17	76465896	76506423
RHBDL1_chr16_670671_683268	1/1	t0001	337	367	95	70	143	10	47	copy fasta	RHBDL1	chr16	670671	683268
RHBDL1_chr16_670671_683268	0/0	t0002	337	1	0	0	1	0	0	copy fasta	RHBDL1	chr16	670671	683268
RHBDL1_chr16_670671_683268	0/0	t0003	337	1	0	0	1	0	0	copy fasta	RHBDL1	chr16	670671	683268
RHBDL1_chr16_670671_683268	0/0	t0004	337	1	0	0	0	0	1	copy fasta	RHBDL1	chr16	670671	683268
RHBDL1_chr16_670671_683268	0/0	t0005	337	1	0	0	1	0	0	copy fasta	RHBDL1	chr16	670671	683268
RHBDL1_chr16_670671_683268	0/0	t0006	337	1	1	0	0	0	0	copy fasta	RHBDL1	chr16	670671	683268
RHBDL2_chr1_38880807_38946830	0/1	t0001	972	173	53	33	62	7	17	copy fasta	RHBDL2	chr1	38880807	38946830
RHBDL2_chr1_38880807_38946830	0/0	t0002	972	103	30	16	43	3	11	copy fasta	RHBDL2	chr1	38880807	38946830
RHBDL2_chr1_38880807_38946830	1/0	t0003	972	70	0	7	50	2	10	copy fasta	RHBDL2	chr1	38880807	38946830
RHBDL2_chr1_38880807_38946830	0/0	t0004	972	4	4	0	0	0	0	copy fasta	RHBDL2	chr1	38880807	38946830
RHBDL2_chr1_38880807_38946830	0/0	t0005	972	3	0	3	0	0	0	copy fasta	RHBDL2	chr1	38880807	38946830
RHBDL2_chr1_38880807_38946830	0/0	t0006	972	3	0	0	3	0	0	copy fasta	RHBDL2	chr1	38880807	38946830
RHBDL2_chr1_38880807_38946830	0/0	t0007	972	2	2	0	0	0	0	copy fasta	RHBDL2	chr1	38880807	38946830
RHBDL2_chr1_38880807_38946830	0/0	t0008	972	1	0	0	0	0	1	copy fasta	RHBDL2	chr1	38880807	38946830
RHBDL2_chr1_38880807_38946830	0/0	t0009	972	1	0	0	1	0	0	copy fasta	RHBDL2	chr1	38880807	38946830
RHBDL2_chr1_38880807_38946830	0/0	t0010	972	1	0	0	1	0	0	copy fasta	RHBDL2	chr1	38880807	38946830
RHBDL2_chr1_38880807_38946830	0/0	t0011	972	1	0	0	0	0	1	copy fasta	RHBDL2	chr1	38880807	38946830