JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RHBDL2_chr1_38880807_38946830	0/0	t0012	972	1	1	0	0	0	0	copy fasta	RHBDL2	chr1	38880807	38946830
RHBDL2_chr1_38880807_38946830	0/0	t0013	972	1	0	1	0	0	0	copy fasta	RHBDL2	chr1	38880807	38946830
RHBDL3_chr17_32260832_32329659	1/1	t0001	3789	181	33	34	75	7	30	copy fasta	RHBDL3	chr17	32260832	32329659
RHBDL3_chr17_32260832_32329659	0/0	t0002	3789	35	15	13	1	2	4	copy fasta	RHBDL3	chr17	32260832	32329659
RHBDL3_chr17_32260832_32329659	0/0	t0003	3789	35	11	6	12	4	2	copy fasta	RHBDL3	chr17	32260832	32329659
RHBDL3_chr17_32260832_32329659	0/0	t0004	3789	7	7	0	0	0	0	copy fasta	RHBDL3	chr17	32260832	32329659
RHBDL3_chr17_32260832_32329659	0/0	t0005	3789	6	1	4	1	0	0	copy fasta	RHBDL3	chr17	32260832	32329659
RHBDL3_chr17_32260832_32329659	0/0	t0006	3791	5	1	2	1	0	1	copy fasta	RHBDL3	chr17	32260832	32329659
RHBDL3_chr17_32260832_32329659	0/0	t0007	3789	3	2	1	0	0	0	copy fasta	RHBDL3	chr17	32260832	32329659
RHBDL3_chr17_32260832_32329659	0/0	t0008	3789	3	3	0	0	0	0	copy fasta	RHBDL3	chr17	32260832	32329659
RHBDL3_chr17_32260832_32329659	0/0	t0009	3789	3	0	0	0	0	3	copy fasta	RHBDL3	chr17	32260832	32329659
RHBDL3_chr17_32260832_32329659	0/0	t0010	3789	2	2	0	0	0	0	copy fasta	RHBDL3	chr17	32260832	32329659
RHBDL3_chr17_32260832_32329659	0/0	t0011	3789	2	0	1	0	1	0	copy fasta	RHBDL3	chr17	32260832	32329659
RHBDL3_chr17_32260832_32329659	0/0	t0012	3783	2	2	0	0	0	0	copy fasta	RHBDL3	chr17	32260832	32329659
RHBDL3_chr17_32260832_32329659	0/0	t0013	3789	2	1	1	0	0	0	copy fasta	RHBDL3	chr17	32260832	32329659
RHBDL3_chr17_32260832_32329659	0/0	t0014	3789	1	1	0	0	0	0	copy fasta	RHBDL3	chr17	32260832	32329659
RHBDL3_chr17_32260832_32329659	0/0	t0015	3783	1	1	0	0	0	0	copy fasta	RHBDL3	chr17	32260832	32329659
RHBDL3_chr17_32260832_32329659	0/0	t0016	3799	1	1	0	0	0	0	copy fasta	RHBDL3	chr17	32260832	32329659
RHBDL3_chr17_32260832_32329659	0/0	t0017	3789	1	1	0	0	0	0	copy fasta	RHBDL3	chr17	32260832	32329659
RHBDL3_chr17_32260832_32329659	0/0	t0018	3789	1	1	0	0	0	0	copy fasta	RHBDL3	chr17	32260832	32329659
RHBDL3_chr17_32260832_32329659	0/0	t0019	3799	1	1	0	0	0	0	copy fasta	RHBDL3	chr17	32260832	32329659
RHBDL3_chr17_32260832_32329659	0/0	t0020	3789	1	0	0	0	0	1	copy fasta	RHBDL3	chr17	32260832	32329659
RHBDL3_chr17_32260832_32329659	0/0	t0021	3789	1	0	1	0	0	0	copy fasta	RHBDL3	chr17	32260832	32329659
RHBDL3_chr17_32260832_32329659	0/0	t0022	3789	1	0	1	0	0	0	copy fasta	RHBDL3	chr17	32260832	32329659
RHBDL3_chr17_32260832_32329659	0/0	t0023	3801	1	1	0	0	0	0	copy fasta	RHBDL3	chr17	32260832	32329659
RHBDL3_chr17_32260832_32329659	0/0	t0024	3789	1	1	0	0	0	0	copy fasta	RHBDL3	chr17	32260832	32329659
RHBDL3_chr17_32260832_32329659	0/0	t0025	3789	1	0	1	0	0	0	copy fasta	RHBDL3	chr17	32260832	32329659
RHBDL3_chr17_32260832_32329659	0/0	t0026	3789	1	0	0	1	0	0	copy fasta	RHBDL3	chr17	32260832	32329659
RHBDL3_chr17_32260832_32329659	0/0	t0027	3789	1	0	0	1	0	0	copy fasta	RHBDL3	chr17	32260832	32329659
RHBDL3_chr17_32260832_32329659	0/0	t0028	3789	1	0	1	0	0	0	copy fasta	RHBDL3	chr17	32260832	32329659
RHBDL3_chr17_32260832_32329659	0/0	t0029	3789	1	1	0	0	0	0	copy fasta	RHBDL3	chr17	32260832	32329659
RHBDL3_chr17_32260832_32329659	0/0	t0030	3801	1	1	0	0	0	0	copy fasta	RHBDL3	chr17	32260832	32329659
RHBDL3_chr17_32260832_32329659	0/0	t0031	3789	1	0	0	0	0	1	copy fasta	RHBDL3	chr17	32260832	32329659
RHBDL3_chr17_32260832_32329659	0/0	t0032	3799	1	1	0	0	0	0	copy fasta	RHBDL3	chr17	32260832	32329659
RHBDL3_chr17_32260832_32329659	0/0	t0033	3789	1	1	0	0	0	0	copy fasta	RHBDL3	chr17	32260832	32329659
RHBG_chr1_156364211_156390219	1/1	t0001	414	437	95	80	198	16	46	copy fasta	RHBG	chr1	156364211	156390219
RHBG_chr1_156364211_156390219	0/0	t0002	414	1	1	0	0	0	0	copy fasta	RHBG	chr1	156364211	156390219
RHCE_chr1_25357249_25425825	1/1	t0001	318	333	85	62	138	14	32	copy fasta	RHCE	chr1	25357249	25425825
RHCE_chr1_25357249_25425825	0/0	t0002	318	1	1	0	0	0	0	copy fasta	RHCE	chr1	25357249	25425825
RHCG_chr15_89466407_89501583	1/0	t0001	513	158	16	32	85	6	18	copy fasta	RHCG	chr15	89466407	89501583
RHCG_chr15_89466407_89501583	0/1	t0002	513	106	59	22	14	4	6	copy fasta	RHCG	chr15	89466407	89501583
RHCG_chr15_89466407_89501583	0/0	t0003	513	87	19	18	40	1	9	copy fasta	RHCG	chr15	89466407	89501583
RHCG_chr15_89466407_89501583	0/0	t0004	513	7	0	4	2	1	0	copy fasta	RHCG	chr15	89466407	89501583
RHCG_chr15_89466407_89501583	0/0	t0005	513	2	0	0	1	0	1	copy fasta	RHCG	chr15	89466407	89501583
RHD_chr1_25267509_25335445	0/1	t0001	1562	85	4	21	42	4	13	copy fasta	RHD	chr1	25267509	25335445
RHD_chr1_25267509_25335445	0/0	t0002	1561	48	9	6	26	2	5	copy fasta	RHD	chr1	25267509	25335445
RHD_chr1_25267509_25335445	0/0	t0003	1563	13	1	3	9	0	0	copy fasta	RHD	chr1	25267509	25335445
RHD_chr1_25267509_25335445	0/0	t0004	1562	12	0	0	10	0	2	copy fasta	RHD	chr1	25267509	25335445
RHD_chr1_25267509_25335445	1/0	t0005	1561	11	9	1	0	0	0	copy fasta	RHD	chr1	25267509	25335445
RHD_chr1_25267509_25335445	0/0	t0006	1560	10	8	1	1	0	0	copy fasta	RHD	chr1	25267509	25335445