JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RHD_chr1_25267509_25335445	0/0	t0007	1559	7	5	2	0	0	0	copy fasta	RHD	chr1	25267509	25335445
RHD_chr1_25267509_25335445	0/0	t0008	1562	4	1	0	3	0	0	copy fasta	RHD	chr1	25267509	25335445
RHD_chr1_25267509_25335445	0/0	t0009	1560	3	3	0	0	0	0	copy fasta	RHD	chr1	25267509	25335445
RHD_chr1_25267509_25335445	0/0	t0010	1562	3	3	0	0	0	0	copy fasta	RHD	chr1	25267509	25335445
RHD_chr1_25267509_25335445	0/0	t0011	1561	2	1	1	0	0	0	copy fasta	RHD	chr1	25267509	25335445
RHD_chr1_25267509_25335445	0/0	t0012	1563	2	0	0	1	0	1	copy fasta	RHD	chr1	25267509	25335445
RHD_chr1_25267509_25335445	0/0	t0013	1561	2	2	0	0	0	0	copy fasta	RHD	chr1	25267509	25335445
RHD_chr1_25267509_25335445	0/0	t0014	1561	1	0	0	1	0	0	copy fasta	RHD	chr1	25267509	25335445
RHD_chr1_25267509_25335445	0/0	t0015	1561	1	0	0	0	0	1	copy fasta	RHD	chr1	25267509	25335445
RHD_chr1_25267509_25335445	0/0	t0016	1561	1	0	1	0	0	0	copy fasta	RHD	chr1	25267509	25335445
RHD_chr1_25267509_25335445	0/0	t0017	1561	1	0	1	0	0	0	copy fasta	RHD	chr1	25267509	25335445
RHD_chr1_25267509_25335445	0/0	t0018	1562	1	0	0	1	0	0	copy fasta	RHD	chr1	25267509	25335445
RHD_chr1_25267509_25335445	0/0	t0019	1562	1	0	1	0	0	0	copy fasta	RHD	chr1	25267509	25335445
RHD_chr1_25267509_25335445	0/0	t0020	1562	1	0	1	0	0	0	copy fasta	RHD	chr1	25267509	25335445
RHD_chr1_25267509_25335445	0/0	t0021	1562	1	0	0	1	0	0	copy fasta	RHD	chr1	25267509	25335445
RHD_chr1_25267509_25335445	0/0	t0022	1562	1	1	0	0	0	0	copy fasta	RHD	chr1	25267509	25335445
RHD_chr1_25267509_25335445	0/0	t0023	1562	1	0	1	0	0	0	copy fasta	RHD	chr1	25267509	25335445
RHD_chr1_25267509_25335445	0/0	t0024	1563	1	1	0	0	0	0	copy fasta	RHD	chr1	25267509	25335445
RHD_chr1_25267509_25335445	0/0	t0025	1562	1	0	0	1	0	0	copy fasta	RHD	chr1	25267509	25335445
RHEBL1_chr12_49059676_49074979	1/1	t0001	622	367	86	66	160	14	39	copy fasta	RHEBL1	chr12	49059676	49074979
RHEBL1_chr12_49059676_49074979	0/0	t0002	621	5	4	1	0	0	0	copy fasta	RHEBL1	chr12	49059676	49074979
RHEBL1_chr12_49059676_49074979	0/0	t0003	622	1	0	0	0	0	1	copy fasta	RHEBL1	chr12	49059676	49074979
RHEBL1_chr12_49059676_49074979	0/0	t0004	622	1	0	1	0	0	0	copy fasta	RHEBL1	chr12	49059676	49074979
RHEB_chr7_151461012_151524895	1/1	t0001	1492	303	61	60	137	12	31	copy fasta	RHEB	chr7	151461012	151524895
RHEB_chr7_151461012_151524895	0/0	t0002	1501	40	14	10	15	0	1	copy fasta	RHEB	chr7	151461012	151524895
RHEB_chr7_151461012_151524895	0/0	t0003	1488	7	7	0	0	0	0	copy fasta	RHEB	chr7	151461012	151524895
RHEB_chr7_151461012_151524895	0/0	t0004	1492	3	0	0	3	0	0	copy fasta	RHEB	chr7	151461012	151524895
RHEB_chr7_151461012_151524895	0/0	t0005	1492	2	2	0	0	0	0	copy fasta	RHEB	chr7	151461012	151524895
RHEB_chr7_151461012_151524895	0/0	t0006	1492	2	0	0	2	0	0	copy fasta	RHEB	chr7	151461012	151524895
RHEB_chr7_151461012_151524895	0/0	t0007	1492	1	0	0	0	1	0	copy fasta	RHEB	chr7	151461012	151524895
RHEB_chr7_151461012_151524895	0/0	t0008	1492	1	1	0	0	0	0	copy fasta	RHEB	chr7	151461012	151524895
RHEB_chr7_151461012_151524895	0/0	t0009	1492	1	0	0	0	0	1	copy fasta	RHEB	chr7	151461012	151524895
RHEB_chr7_151461012_151524895	0/0	t0010	1492	1	0	0	0	1	0	copy fasta	RHEB	chr7	151461012	151524895
RHEB_chr7_151461012_151524895	0/0	t0011	1492	1	0	0	0	0	1	copy fasta	RHEB	chr7	151461012	151524895
RHEB_chr7_151461012_151524895	0/0	t0012	1492	1	0	0	1	0	0	copy fasta	RHEB	chr7	151461012	151524895
RHEB_chr7_151461012_151524895	0/0	t0013	1492	1	1	0	0	0	0	copy fasta	RHEB	chr7	151461012	151524895
RHEX_chr1_206048173_206107449	1/1	t0001	687	273	44	61	123	11	32	copy fasta	RHEX	chr1	206048173	206107449
RHEX_chr1_206048173_206107449	0/0	t0002	687	18	18	0	0	0	0	copy fasta	RHEX	chr1	206048173	206107449
RHEX_chr1_206048173_206107449	0/0	t0003	687	8	8	0	0	0	0	copy fasta	RHEX	chr1	206048173	206107449
RHEX_chr1_206048173_206107449	0/0	t0004	687	8	8	0	0	0	0	copy fasta	RHEX	chr1	206048173	206107449
RHEX_chr1_206048173_206107449	0/0	t0005	687	5	4	1	0	0	0	copy fasta	RHEX	chr1	206048173	206107449
RHEX_chr1_206048173_206107449	0/0	t0006	594	5	0	0	5	0	0	copy fasta	RHEX	chr1	206048173	206107449
RHEX_chr1_206048173_206107449	0/0	t0007	687	4	4	0	0	0	0	copy fasta	RHEX	chr1	206048173	206107449
RHEX_chr1_206048173_206107449	0/0	t0008	687	3	3	0	0	0	0	copy fasta	RHEX	chr1	206048173	206107449
RHEX_chr1_206048173_206107449	0/0	t0009	687	3	0	0	2	1	0	copy fasta	RHEX	chr1	206048173	206107449
RHEX_chr1_206048173_206107449	0/0	t0010	687	2	2	0	0	0	0	copy fasta	RHEX	chr1	206048173	206107449
RHEX_chr1_206048173_206107449	0/0	t0011	687	2	0	2	0	0	0	copy fasta	RHEX	chr1	206048173	206107449
RHEX_chr1_206048173_206107449	0/0	t0012	687	1	1	0	0	0	0	copy fasta	RHEX	chr1	206048173	206107449
RHEX_chr1_206048173_206107449	0/0	t0013	687	1	1	0	0	0	0	copy fasta	RHEX	chr1	206048173	206107449
RHEX_chr1_206048173_206107449	0/0	t0014	687	1	1	0	0	0	0	copy fasta	RHEX	chr1	206048173	206107449