JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RHNO1_chr12_2872223_2894524	1/1	t0001	1210	314	51	62	153	13	33	copy fasta	RHNO1	chr12	2872223	2894524
RHNO1_chr12_2872223_2894524	0/0	t0002	1210	62	18	9	29	0	6	copy fasta	RHNO1	chr12	2872223	2894524
RHNO1_chr12_2872223_2894524	0/0	t0003	1210	17	16	1	0	0	0	copy fasta	RHNO1	chr12	2872223	2894524
RHNO1_chr12_2872223_2894524	0/0	t0004	1210	8	0	0	8	0	0	copy fasta	RHNO1	chr12	2872223	2894524
RHNO1_chr12_2872223_2894524	0/0	t0005	1210	5	0	3	1	1	0	copy fasta	RHNO1	chr12	2872223	2894524
RHNO1_chr12_2872223_2894524	0/0	t0006	1210	3	2	0	0	0	1	copy fasta	RHNO1	chr12	2872223	2894524
RHNO1_chr12_2872223_2894524	0/0	t0007	1198	2	2	0	0	0	0	copy fasta	RHNO1	chr12	2872223	2894524
RHNO1_chr12_2872223_2894524	0/0	t0008	1210	2	0	0	2	0	0	copy fasta	RHNO1	chr12	2872223	2894524
RHNO1_chr12_2872223_2894524	0/0	t0009	1208	2	2	0	0	0	0	copy fasta	RHNO1	chr12	2872223	2894524
RHNO1_chr12_2872223_2894524	0/0	t0010	1210	1	1	0	0	0	0	copy fasta	RHNO1	chr12	2872223	2894524
RHNO1_chr12_2872223_2894524	0/0	t0011	1210	1	0	1	0	0	0	copy fasta	RHNO1	chr12	2872223	2894524
RHNO1_chr12_2872223_2894524	0/0	t0012	1210	1	0	0	1	0	0	copy fasta	RHNO1	chr12	2872223	2894524
RHNO1_chr12_2872223_2894524	0/0	t0013	1210	1	0	0	1	0	0	copy fasta	RHNO1	chr12	2872223	2894524
RHNO1_chr12_2872223_2894524	0/0	t0014	1210	1	0	0	0	0	1	copy fasta	RHNO1	chr12	2872223	2894524
RHNO1_chr12_2872223_2894524	0/0	t0015	1210	1	0	0	1	0	0	copy fasta	RHNO1	chr12	2872223	2894524
RHNO1_chr12_2872223_2894524	0/0	t0016	1198	1	1	0	0	0	0	copy fasta	RHNO1	chr12	2872223	2894524
RHNO1_chr12_2872223_2894524	0/0	t0017	1210	1	1	0	0	0	0	copy fasta	RHNO1	chr12	2872223	2894524
RHNO1_chr12_2872223_2894524	0/0	t0018	1210	1	0	0	1	0	0	copy fasta	RHNO1	chr12	2872223	2894524
RHNO1_chr12_2872223_2894524	0/0	t0019	1210	1	0	0	1	0	0	copy fasta	RHNO1	chr12	2872223	2894524
RHNO1_chr12_2872223_2894524	0/0	t0020	1210	1	0	0	0	0	1	copy fasta	RHNO1	chr12	2872223	2894524
RHOA_chr3_49354145_49416976	0/1	t0001	1224	212	62	41	59	13	36	copy fasta	RHOA	chr3	49354145	49416976
RHOA_chr3_49354145_49416976	1/0	t0002	1224	42	21	11	1	5	3	copy fasta	RHOA	chr3	49354145	49416976
RHOA_chr3_49354145_49416976	0/0	t0003	1224	4	4	0	0	0	0	copy fasta	RHOA	chr3	49354145	49416976
RHOA_chr3_49354145_49416976	0/0	t0004	1224	2	0	0	2	0	0	copy fasta	RHOA	chr3	49354145	49416976
RHOA_chr3_49354145_49416976	0/0	t0005	1224	1	1	0	0	0	0	copy fasta	RHOA	chr3	49354145	49416976
RHOA_chr3_49354145_49416976	0/0	t0006	1224	1	1	0	0	0	0	copy fasta	RHOA	chr3	49354145	49416976
RHOA_chr3_49354145_49416976	0/0	t0007	1224	1	1	0	0	0	0	copy fasta	RHOA	chr3	49354145	49416976
RHOA_chr3_49354145_49416976	0/0	t0008	1224	1	0	0	0	0	1	copy fasta	RHOA	chr3	49354145	49416976
RHOBTB1_chr10_60864438_60949185	1/0	t0001	2321	141	21	23	71	12	13	copy fasta	RHOBTB1	chr10	60864438	60949185
RHOBTB1_chr10_60864438_60949185	0/0	t0002	2321	98	34	14	43	1	6	copy fasta	RHOBTB1	chr10	60864438	60949185
RHOBTB1_chr10_60864438_60949185	0/0	t0003	2321	25	5	7	9	3	1	copy fasta	RHOBTB1	chr10	60864438	60949185
RHOBTB1_chr10_60864438_60949185	0/0	t0004	2317	10	10	0	0	0	0	copy fasta	RHOBTB1	chr10	60864438	60949185
RHOBTB1_chr10_60864438_60949185	0/1	t0005	2321	9	4	2	2	0	0	copy fasta	RHOBTB1	chr10	60864438	60949185
RHOBTB1_chr10_60864438_60949185	0/0	t0006	2321	5	4	1	0	0	0	copy fasta	RHOBTB1	chr10	60864438	60949185
RHOBTB1_chr10_60864438_60949185	0/0	t0007	2321	3	3	0	0	0	0	copy fasta	RHOBTB1	chr10	60864438	60949185
RHOBTB1_chr10_60864438_60949185	0/0	t0008	2321	3	2	1	0	0	0	copy fasta	RHOBTB1	chr10	60864438	60949185
RHOBTB1_chr10_60864438_60949185	0/0	t0009	2321	2	2	0	0	0	0	copy fasta	RHOBTB1	chr10	60864438	60949185
RHOBTB1_chr10_60864438_60949185	0/0	t0010	2321	2	0	0	0	0	2	copy fasta	RHOBTB1	chr10	60864438	60949185
RHOBTB1_chr10_60864438_60949185	0/0	t0011	2321	1	0	0	0	0	1	copy fasta	RHOBTB1	chr10	60864438	60949185
RHOBTB1_chr10_60864438_60949185	0/0	t0012	2321	1	1	0	0	0	0	copy fasta	RHOBTB1	chr10	60864438	60949185
RHOBTB1_chr10_60864438_60949185	0/0	t0013	2321	1	0	1	0	0	0	copy fasta	RHOBTB1	chr10	60864438	60949185
RHOBTB1_chr10_60864438_60949185	0/0	t0014	2321	1	0	0	0	0	1	copy fasta	RHOBTB1	chr10	60864438	60949185
RHOBTB1_chr10_60864438_60949185	0/0	t0015	2321	1	0	0	1	0	0	copy fasta	RHOBTB1	chr10	60864438	60949185
RHOBTB1_chr10_60864438_60949185	0/0	t0016	2321	1	0	0	1	0	0	copy fasta	RHOBTB1	chr10	60864438	60949185
RHOBTB1_chr10_60864438_60949185	0/0	t0017	2307	1	0	0	0	0	1	copy fasta	RHOBTB1	chr10	60864438	60949185
RHOBTB1_chr10_60864438_60949185	0/0	t0018	2321	1	0	1	0	0	0	copy fasta	RHOBTB1	chr10	60864438	60949185
RHOBTB1_chr10_60864438_60949185	0/0	t0019	2321	1	0	0	0	0	1	copy fasta	RHOBTB1	chr10	60864438	60949185
RHOBTB1_chr10_60864438_60949185	0/0	t0020	2317	1	1	0	0	0	0	copy fasta	RHOBTB1	chr10	60864438	60949185
RHOBTB1_chr10_60864438_60949185	0/0	t0021	2321	1	1	0	0	0	0	copy fasta	RHOBTB1	chr10	60864438	60949185
RHOBTB1_chr10_60864438_60949185	0/0	t0022	2321	1	0	0	1	0	0	copy fasta	RHOBTB1	chr10	60864438	60949185