JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RHOBTB1_chr10_60864438_60949185	0/0	t0023	2321	1	0	0	0	0	1	copy fasta	RHOBTB1	chr10	60864438	60949185
RHOBTB1_chr10_60864438_60949185	0/0	t0024	2321	1	0	0	1	0	0	copy fasta	RHOBTB1	chr10	60864438	60949185
RHOBTB1_chr10_60864438_60949185	0/0	t0025	2321	1	0	0	1	0	0	copy fasta	RHOBTB1	chr10	60864438	60949185
RHOBTB1_chr10_60864438_60949185	0/0	t0026	2321	1	1	0	0	0	0	copy fasta	RHOBTB1	chr10	60864438	60949185
RHOBTB1_chr10_60864438_60949185	0/0	t0027	2321	1	1	0	0	0	0	copy fasta	RHOBTB1	chr10	60864438	60949185
RHOBTB1_chr10_60864438_60949185	0/0	t0028	2321	1	0	0	0	0	1	copy fasta	RHOBTB1	chr10	60864438	60949185
RHOBTB2_chr8_22994548_23025199	0/0	t0001	3299	110	20	19	50	8	13	copy fasta	RHOBTB2	chr8	22994548	23025199
RHOBTB2_chr8_22994548_23025199	0/1	t0002	3299	95	3	24	50	5	12	copy fasta	RHOBTB2	chr8	22994548	23025199
RHOBTB2_chr8_22994548_23025199	0/0	t0003	3299	58	13	3	27	0	15	copy fasta	RHOBTB2	chr8	22994548	23025199
RHOBTB2_chr8_22994548_23025199	1/0	t0004	3299	26	10	7	4	1	3	copy fasta	RHOBTB2	chr8	22994548	23025199
RHOBTB2_chr8_22994548_23025199	0/0	t0005	3299	9	8	1	0	0	0	copy fasta	RHOBTB2	chr8	22994548	23025199
RHOBTB2_chr8_22994548_23025199	0/0	t0006	3299	7	6	1	0	0	0	copy fasta	RHOBTB2	chr8	22994548	23025199
RHOBTB2_chr8_22994548_23025199	0/0	t0007	3299	6	3	3	0	0	0	copy fasta	RHOBTB2	chr8	22994548	23025199
RHOBTB2_chr8_22994548_23025199	0/0	t0008	3295	6	0	6	0	0	0	copy fasta	RHOBTB2	chr8	22994548	23025199
RHOBTB2_chr8_22994548_23025199	0/0	t0009	3300	3	3	0	0	0	0	copy fasta	RHOBTB2	chr8	22994548	23025199
RHOBTB2_chr8_22994548_23025199	0/0	t0010	3299	3	3	0	0	0	0	copy fasta	RHOBTB2	chr8	22994548	23025199
RHOBTB2_chr8_22994548_23025199	0/0	t0011	3322	3	0	0	3	0	0	copy fasta	RHOBTB2	chr8	22994548	23025199
RHOBTB2_chr8_22994548_23025199	0/0	t0012	3299	2	2	0	0	0	0	copy fasta	RHOBTB2	chr8	22994548	23025199
RHOBTB2_chr8_22994548_23025199	0/0	t0013	3299	2	0	2	0	0	0	copy fasta	RHOBTB2	chr8	22994548	23025199
RHOBTB2_chr8_22994548_23025199	0/0	t0014	3299	2	2	0	0	0	0	copy fasta	RHOBTB2	chr8	22994548	23025199
RHOBTB2_chr8_22994548_23025199	0/0	t0015	3299	2	2	0	0	0	0	copy fasta	RHOBTB2	chr8	22994548	23025199
RHOBTB2_chr8_22994548_23025199	0/0	t0016	3299	2	2	0	0	0	0	copy fasta	RHOBTB2	chr8	22994548	23025199
RHOBTB2_chr8_22994548_23025199	0/0	t0017	3299	2	1	1	0	0	0	copy fasta	RHOBTB2	chr8	22994548	23025199
RHOBTB2_chr8_22994548_23025199	0/0	t0018	3299	2	2	0	0	0	0	copy fasta	RHOBTB2	chr8	22994548	23025199
RHOBTB2_chr8_22994548_23025199	0/0	t0019	3299	1	0	0	0	1	0	copy fasta	RHOBTB2	chr8	22994548	23025199
RHOBTB2_chr8_22994548_23025199	0/0	t0020	3300	1	1	0	0	0	0	copy fasta	RHOBTB2	chr8	22994548	23025199
RHOBTB2_chr8_22994548_23025199	0/0	t0021	3299	1	0	1	0	0	0	copy fasta	RHOBTB2	chr8	22994548	23025199
RHOBTB2_chr8_22994548_23025199	0/0	t0022	3299	1	0	0	1	0	0	copy fasta	RHOBTB2	chr8	22994548	23025199
RHOBTB2_chr8_22994548_23025199	0/0	t0023	3299	1	0	0	1	0	0	copy fasta	RHOBTB2	chr8	22994548	23025199
RHOBTB2_chr8_22994548_23025199	0/0	t0024	3299	1	1	0	0	0	0	copy fasta	RHOBTB2	chr8	22994548	23025199
RHOBTB2_chr8_22994548_23025199	0/0	t0025	3299	1	1	0	0	0	0	copy fasta	RHOBTB2	chr8	22994548	23025199
RHOBTB2_chr8_22994548_23025199	0/0	t0026	3299	1	1	0	0	0	0	copy fasta	RHOBTB2	chr8	22994548	23025199
RHOBTB2_chr8_22994548_23025199	0/0	t0027	3299	1	1	0	0	0	0	copy fasta	RHOBTB2	chr8	22994548	23025199
RHOBTB2_chr8_22994548_23025199	0/0	t0028	3299	1	1	0	0	0	0	copy fasta	RHOBTB2	chr8	22994548	23025199
RHOBTB2_chr8_22994548_23025199	0/0	t0029	3299	1	0	0	0	0	1	copy fasta	RHOBTB2	chr8	22994548	23025199
RHOBTB2_chr8_22994548_23025199	0/0	t0030	3299	1	0	1	0	0	0	copy fasta	RHOBTB2	chr8	22994548	23025199
RHOBTB2_chr8_22994548_23025199	0/0	t0031	3299	1	0	0	1	0	0	copy fasta	RHOBTB2	chr8	22994548	23025199
RHOBTB2_chr8_22994548_23025199	0/0	t0032	3299	1	0	0	0	1	0	copy fasta	RHOBTB2	chr8	22994548	23025199
RHOBTB2_chr8_22994548_23025199	0/0	t0033	3299	1	0	0	1	0	0	copy fasta	RHOBTB2	chr8	22994548	23025199
RHOBTB2_chr8_22994548_23025199	0/0	t0034	3299	1	0	0	1	0	0	copy fasta	RHOBTB2	chr8	22994548	23025199
RHOBTB2_chr8_22994548_23025199	0/0	t0035	3299	1	0	1	0	0	0	copy fasta	RHOBTB2	chr8	22994548	23025199
RHOBTB2_chr8_22994548_23025199	0/0	t0036	3299	1	0	0	1	0	0	copy fasta	RHOBTB2	chr8	22994548	23025199
RHOBTB3_chr5_95726336_95801361	0/0	t0001	3536	105	45	20	27	1	12	copy fasta	RHOBTB3	chr5	95726336	95801361
RHOBTB3_chr5_95726336_95801361	1/0	t0002	3535	77	7	18	45	2	4	copy fasta	RHOBTB3	chr5	95726336	95801361
RHOBTB3_chr5_95726336_95801361	0/1	t0003	3535	48	11	7	18	2	9	copy fasta	RHOBTB3	chr5	95726336	95801361
RHOBTB3_chr5_95726336_95801361	0/0	t0004	3535	13	2	1	2	1	7	copy fasta	RHOBTB3	chr5	95726336	95801361
RHOBTB3_chr5_95726336_95801361	0/0	t0005	3536	9	0	9	0	0	0	copy fasta	RHOBTB3	chr5	95726336	95801361
RHOBTB3_chr5_95726336_95801361	0/0	t0006	3536	7	3	3	0	1	0	copy fasta	RHOBTB3	chr5	95726336	95801361
RHOBTB3_chr5_95726336_95801361	0/0	t0007	3535	5	0	0	5	0	0	copy fasta	RHOBTB3	chr5	95726336	95801361
RHOBTB3_chr5_95726336_95801361	0/0	t0008	3534	4	0	2	0	1	1	copy fasta	RHOBTB3	chr5	95726336	95801361