JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RHOBTB3_chr5_95726336_95801361	0/0	t0009	3535	4	2	1	0	0	1	copy fasta	RHOBTB3	chr5	95726336	95801361
RHOBTB3_chr5_95726336_95801361	0/0	t0010	3535	4	4	0	0	0	0	copy fasta	RHOBTB3	chr5	95726336	95801361
RHOBTB3_chr5_95726336_95801361	0/0	t0011	3535	3	1	0	0	0	2	copy fasta	RHOBTB3	chr5	95726336	95801361
RHOBTB3_chr5_95726336_95801361	0/0	t0012	3535	3	0	1	2	0	0	copy fasta	RHOBTB3	chr5	95726336	95801361
RHOBTB3_chr5_95726336_95801361	0/0	t0013	3536	2	0	0	0	0	2	copy fasta	RHOBTB3	chr5	95726336	95801361
RHOBTB3_chr5_95726336_95801361	0/0	t0014	3534	2	2	0	0	0	0	copy fasta	RHOBTB3	chr5	95726336	95801361
RHOBTB3_chr5_95726336_95801361	0/0	t0015	3534	1	0	1	0	0	0	copy fasta	RHOBTB3	chr5	95726336	95801361
RHOBTB3_chr5_95726336_95801361	0/0	t0016	3535	1	1	0	0	0	0	copy fasta	RHOBTB3	chr5	95726336	95801361
RHOBTB3_chr5_95726336_95801361	0/0	t0017	3536	1	1	0	0	0	0	copy fasta	RHOBTB3	chr5	95726336	95801361
RHOBTB3_chr5_95726336_95801361	0/0	t0018	3535	1	0	0	0	0	1	copy fasta	RHOBTB3	chr5	95726336	95801361
RHOBTB3_chr5_95726336_95801361	0/0	t0019	3535	1	1	0	0	0	0	copy fasta	RHOBTB3	chr5	95726336	95801361
RHOBTB3_chr5_95726336_95801361	0/0	t0020	3535	1	1	0	0	0	0	copy fasta	RHOBTB3	chr5	95726336	95801361
RHOBTB3_chr5_95726336_95801361	0/0	t0021	3536	1	1	0	0	0	0	copy fasta	RHOBTB3	chr5	95726336	95801361
RHOBTB3_chr5_95726336_95801361	0/0	t0022	3536	1	0	1	0	0	0	copy fasta	RHOBTB3	chr5	95726336	95801361
RHOBTB3_chr5_95726336_95801361	0/0	t0023	3536	1	0	0	0	0	1	copy fasta	RHOBTB3	chr5	95726336	95801361
RHOBTB3_chr5_95726336_95801361	0/0	t0024	3536	1	0	0	1	0	0	copy fasta	RHOBTB3	chr5	95726336	95801361
RHOBTB3_chr5_95726336_95801361	0/0	t0025	3535	1	0	0	1	0	0	copy fasta	RHOBTB3	chr5	95726336	95801361
RHOBTB3_chr5_95726336_95801361	0/0	t0026	3574	1	0	0	1	0	0	copy fasta	RHOBTB3	chr5	95726336	95801361
RHOBTB3_chr5_95726336_95801361	0/0	t0027	3535	1	1	0	0	0	0	copy fasta	RHOBTB3	chr5	95726336	95801361
RHOBTB3_chr5_95726336_95801361	0/0	t0028	3535	1	0	0	1	0	0	copy fasta	RHOBTB3	chr5	95726336	95801361
RHOBTB3_chr5_95726336_95801361	0/0	t0029	3535	1	1	0	0	0	0	copy fasta	RHOBTB3	chr5	95726336	95801361
RHOBTB3_chr5_95726336_95801361	0/0	t0030	3535	1	1	0	0	0	0	copy fasta	RHOBTB3	chr5	95726336	95801361
RHOBTB3_chr5_95726336_95801361	0/0	t0031	3535	1	1	0	0	0	0	copy fasta	RHOBTB3	chr5	95726336	95801361
RHOBTB3_chr5_95726336_95801361	0/0	t0032	3535	1	0	0	1	0	0	copy fasta	RHOBTB3	chr5	95726336	95801361
RHOB_chr2_20442074_20454440	0/0	t0001	1778	178	11	37	100	5	25	copy fasta	RHOB	chr2	20442074	20454440
RHOB_chr2_20442074_20454440	1/0	t0002	1777	78	32	17	14	5	9	copy fasta	RHOB	chr2	20442074	20454440
RHOB_chr2_20442074_20454440	0/0	t0003	1774	39	13	8	16	0	2	copy fasta	RHOB	chr2	20442074	20454440
RHOB_chr2_20442074_20454440	0/0	t0004	1777	15	11	4	0	0	0	copy fasta	RHOB	chr2	20442074	20454440
RHOB_chr2_20442074_20454440	0/1	t0005	1778	14	3	5	0	2	3	copy fasta	RHOB	chr2	20442074	20454440
RHOB_chr2_20442074_20454440	0/0	t0006	1777	8	8	0	0	0	0	copy fasta	RHOB	chr2	20442074	20454440
RHOB_chr2_20442074_20454440	0/0	t0007	1777	4	4	0	0	0	0	copy fasta	RHOB	chr2	20442074	20454440
RHOB_chr2_20442074_20454440	0/0	t0008	1778	4	0	0	4	0	0	copy fasta	RHOB	chr2	20442074	20454440
RHOB_chr2_20442074_20454440	0/0	t0009	1778	3	0	0	3	0	0	copy fasta	RHOB	chr2	20442074	20454440
RHOB_chr2_20442074_20454440	0/0	t0010	1778	3	3	0	0	0	0	copy fasta	RHOB	chr2	20442074	20454440
RHOB_chr2_20442074_20454440	0/0	t0011	1778	2	0	0	2	0	0	copy fasta	RHOB	chr2	20442074	20454440
RHOB_chr2_20442074_20454440	0/0	t0012	1775	2	0	0	2	0	0	copy fasta	RHOB	chr2	20442074	20454440
RHOB_chr2_20442074_20454440	0/0	t0013	1777	2	2	0	0	0	0	copy fasta	RHOB	chr2	20442074	20454440
RHOB_chr2_20442074_20454440	0/0	t0014	1777	2	0	2	0	0	0	copy fasta	RHOB	chr2	20442074	20454440
RHOB_chr2_20442074_20454440	0/0	t0015	1778	1	1	0	0	0	0	copy fasta	RHOB	chr2	20442074	20454440
RHOB_chr2_20442074_20454440	0/0	t0016	1792	1	1	0	0	0	0	copy fasta	RHOB	chr2	20442074	20454440
RHOB_chr2_20442074_20454440	0/0	t0017	1777	1	1	0	0	0	0	copy fasta	RHOB	chr2	20442074	20454440
RHOB_chr2_20442074_20454440	0/0	t0018	1777	1	1	0	0	0	0	copy fasta	RHOB	chr2	20442074	20454440
RHOB_chr2_20442074_20454440	0/0	t0019	1777	1	1	0	0	0	0	copy fasta	RHOB	chr2	20442074	20454440
RHOB_chr2_20442074_20454440	0/0	t0020	1777	1	1	0	0	0	0	copy fasta	RHOB	chr2	20442074	20454440
RHOB_chr2_20442074_20454440	0/0	t0021	1778	1	0	1	0	0	0	copy fasta	RHOB	chr2	20442074	20454440
RHOB_chr2_20442074_20454440	0/0	t0022	1778	1	0	0	1	0	0	copy fasta	RHOB	chr2	20442074	20454440
RHOB_chr2_20442074_20454440	0/0	t0023	1777	1	1	0	0	0	0	copy fasta	RHOB	chr2	20442074	20454440
RHOB_chr2_20442074_20454440	0/0	t0024	1777	1	0	0	1	0	0	copy fasta	RHOB	chr2	20442074	20454440
RHOB_chr2_20442074_20454440	0/0	t0025	1778	1	0	0	0	0	1	copy fasta	RHOB	chr2	20442074	20454440
RHOB_chr2_20442074_20454440	0/0	t0026	1777	1	1	0	0	0	0	copy fasta	RHOB	chr2	20442074	20454440