JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RHOB_chr2_20442074_20454440	0/0	t0027	1774	1	1	0	0	0	0	copy fasta	RHOB	chr2	20442074	20454440
RHOB_chr2_20442074_20454440	0/0	t0028	1778	1	0	0	1	0	0	copy fasta	RHOB	chr2	20442074	20454440
RHOC_chr1_112696131_112712127	1/1	t0001	536	415	90	79	191	14	39	copy fasta	RHOC	chr1	112696131	112712127
RHOC_chr1_112696131_112712127	0/0	t0002	536	5	4	1	0	0	0	copy fasta	RHOC	chr1	112696131	112712127
RHOC_chr1_112696131_112712127	0/0	t0003	547	2	2	0	0	0	0	copy fasta	RHOC	chr1	112696131	112712127
RHOC_chr1_112696131_112712127	0/0	t0004	536	2	2	0	0	0	0	copy fasta	RHOC	chr1	112696131	112712127
RHOC_chr1_112696131_112712127	0/0	t0005	536	1	0	0	0	0	1	copy fasta	RHOC	chr1	112696131	112712127
RHOC_chr1_112696131_112712127	0/0	t0006	536	1	0	0	1	0	0	copy fasta	RHOC	chr1	112696131	112712127
RHOC_chr1_112696131_112712127	0/0	t0007	536	1	0	0	0	0	1	copy fasta	RHOC	chr1	112696131	112712127
RHOC_chr1_112696131_112712127	0/0	t0008	536	1	0	0	0	0	1	copy fasta	RHOC	chr1	112696131	112712127
RHOD_chr11_67051847_67077017	1/1	t0001	472	384	92	68	172	12	38	copy fasta	RHOD	chr11	67051847	67077017
RHOD_chr11_67051847_67077017	0/0	t0002	472	3	0	0	0	1	2	copy fasta	RHOD	chr11	67051847	67077017
RHOD_chr11_67051847_67077017	0/0	t0003	472	2	2	0	0	0	0	copy fasta	RHOD	chr11	67051847	67077017
RHOD_chr11_67051847_67077017	0/0	t0004	472	2	0	0	1	1	0	copy fasta	RHOD	chr11	67051847	67077017
RHOD_chr11_67051847_67077017	0/0	t0005	472	1	1	0	0	0	0	copy fasta	RHOD	chr11	67051847	67077017
RHOD_chr11_67051847_67077017	0/0	t0006	489	1	0	0	1	0	0	copy fasta	RHOD	chr11	67051847	67077017
RHOD_chr11_67051847_67077017	0/0	t0007	472	1	1	0	0	0	0	copy fasta	RHOD	chr11	67051847	67077017
RHOF_chr12_121772754_121798688	0/1	t0001	1800	126	1	29	67	13	15	copy fasta	RHOF	chr12	121772754	121798688
RHOF_chr12_121772754_121798688	0/0	t0002	1802	41	11	1	24	0	5	copy fasta	RHOF	chr12	121772754	121798688
RHOF_chr12_121772754_121798688	0/0	t0003	1800	34	25	8	0	1	0	copy fasta	RHOF	chr12	121772754	121798688
RHOF_chr12_121772754_121798688	0/0	t0004	1802	24	12	0	8	0	4	copy fasta	RHOF	chr12	121772754	121798688
RHOF_chr12_121772754_121798688	0/0	t0005	1801	17	0	3	12	0	2	copy fasta	RHOF	chr12	121772754	121798688
RHOF_chr12_121772754_121798688	0/0	t0006	1803	15	2	1	11	0	1	copy fasta	RHOF	chr12	121772754	121798688
RHOF_chr12_121772754_121798688	1/0	t0007	1800	13	6	1	0	0	5	copy fasta	RHOF	chr12	121772754	121798688
RHOF_chr12_121772754_121798688	0/0	t0008	1800	11	2	7	2	0	0	copy fasta	RHOF	chr12	121772754	121798688
RHOF_chr12_121772754_121798688	0/0	t0009	1800	9	0	6	0	1	2	copy fasta	RHOF	chr12	121772754	121798688
RHOF_chr12_121772754_121798688	0/0	t0010	1800	9	7	2	0	0	0	copy fasta	RHOF	chr12	121772754	121798688
RHOF_chr12_121772754_121798688	0/0	t0011	1803	6	2	0	4	0	0	copy fasta	RHOF	chr12	121772754	121798688
RHOF_chr12_121772754_121798688	0/0	t0012	1802	6	0	0	6	0	0	copy fasta	RHOF	chr12	121772754	121798688
RHOF_chr12_121772754_121798688	0/0	t0013	1800	5	0	0	5	0	0	copy fasta	RHOF	chr12	121772754	121798688
RHOF_chr12_121772754_121798688	0/0	t0014	1801	5	0	0	5	0	0	copy fasta	RHOF	chr12	121772754	121798688
RHOF_chr12_121772754_121798688	0/0	t0015	1802	5	3	2	0	0	0	copy fasta	RHOF	chr12	121772754	121798688
RHOF_chr12_121772754_121798688	0/0	t0016	1802	4	0	4	0	0	0	copy fasta	RHOF	chr12	121772754	121798688
RHOF_chr12_121772754_121798688	0/0	t0017	1799	4	0	1	3	0	0	copy fasta	RHOF	chr12	121772754	121798688
RHOF_chr12_121772754_121798688	0/0	t0018	1800	4	1	0	0	0	3	copy fasta	RHOF	chr12	121772754	121798688
RHOF_chr12_121772754_121798688	0/0	t0019	1800	4	0	0	3	0	1	copy fasta	RHOF	chr12	121772754	121798688
RHOF_chr12_121772754_121798688	0/0	t0020	1802	3	3	0	0	0	0	copy fasta	RHOF	chr12	121772754	121798688
RHOF_chr12_121772754_121798688	0/0	t0021	1800	2	0	0	2	0	0	copy fasta	RHOF	chr12	121772754	121798688
RHOF_chr12_121772754_121798688	0/0	t0022	1800	2	0	0	0	1	1	copy fasta	RHOF	chr12	121772754	121798688
RHOF_chr12_121772754_121798688	0/0	t0023	1802	2	2	0	0	0	0	copy fasta	RHOF	chr12	121772754	121798688
RHOF_chr12_121772754_121798688	0/0	t0024	1803	2	2	0	0	0	0	copy fasta	RHOF	chr12	121772754	121798688
RHOF_chr12_121772754_121798688	0/0	t0025	1801	2	0	1	0	1	0	copy fasta	RHOF	chr12	121772754	121798688
RHOF_chr12_121772754_121798688	0/0	t0026	1800	2	2	0	0	0	0	copy fasta	RHOF	chr12	121772754	121798688
RHOF_chr12_121772754_121798688	0/0	t0027	1803	1	1	0	0	0	0	copy fasta	RHOF	chr12	121772754	121798688
RHOF_chr12_121772754_121798688	0/0	t0028	1800	1	0	0	0	0	1	copy fasta	RHOF	chr12	121772754	121798688
RHOF_chr12_121772754_121798688	0/0	t0029	1802	1	1	0	0	0	0	copy fasta	RHOF	chr12	121772754	121798688
RHOF_chr12_121772754_121798688	0/0	t0030	1801	1	0	0	1	0	0	copy fasta	RHOF	chr12	121772754	121798688
RHOF_chr12_121772754_121798688	0/0	t0031	1801	1	0	0	1	0	0	copy fasta	RHOF	chr12	121772754	121798688
RHOF_chr12_121772754_121798688	0/0	t0032	1802	1	1	0	0	0	0	copy fasta	RHOF	chr12	121772754	121798688
RHOF_chr12_121772754_121798688	0/0	t0033	1800	1	0	0	1	0	0	copy fasta	RHOF	chr12	121772754	121798688