JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RHOF_chr12_121772754_121798688	0/0	t0034	1800	1	0	0	1	0	0	copy fasta	RHOF	chr12	121772754	121798688
RHOF_chr12_121772754_121798688	0/0	t0035	1801	1	0	0	1	0	0	copy fasta	RHOF	chr12	121772754	121798688
RHOF_chr12_121772754_121798688	0/0	t0036	1802	1	0	1	0	0	0	copy fasta	RHOF	chr12	121772754	121798688
RHOF_chr12_121772754_121798688	0/0	t0037	1799	1	1	0	0	0	0	copy fasta	RHOF	chr12	121772754	121798688
RHOF_chr12_121772754_121798688	0/0	t0038	1801	1	1	0	0	0	0	copy fasta	RHOF	chr12	121772754	121798688
RHOF_chr12_121772754_121798688	0/0	t0039	1802	1	0	0	1	0	0	copy fasta	RHOF	chr12	121772754	121798688
RHOF_chr12_121772754_121798688	0/0	t0040	1803	1	1	0	0	0	0	copy fasta	RHOF	chr12	121772754	121798688
RHOF_chr12_121772754_121798688	0/0	t0041	1801	1	0	1	0	0	0	copy fasta	RHOF	chr12	121772754	121798688
RHOF_chr12_121772754_121798688	0/0	t0042	1802	1	1	0	0	0	0	copy fasta	RHOF	chr12	121772754	121798688
RHOF_chr12_121772754_121798688	0/0	t0043	1803	1	0	0	0	0	1	copy fasta	RHOF	chr12	121772754	121798688
RHOF_chr12_121772754_121798688	0/0	t0044	1800	1	0	0	0	0	1	copy fasta	RHOF	chr12	121772754	121798688
RHOF_chr12_121772754_121798688	0/0	t0045	1802	1	1	0	0	0	0	copy fasta	RHOF	chr12	121772754	121798688
RHOF_chr12_121772754_121798688	0/0	t0046	1803	1	1	0	0	0	0	copy fasta	RHOF	chr12	121772754	121798688
RHOF_chr12_121772754_121798688	0/0	t0047	1802	1	1	0	0	0	0	copy fasta	RHOF	chr12	121772754	121798688
RHOF_chr12_121772754_121798688	0/0	t0048	1802	1	1	0	0	0	0	copy fasta	RHOF	chr12	121772754	121798688
RHOF_chr12_121772754_121798688	0/0	t0049	1801	1	1	0	0	0	0	copy fasta	RHOF	chr12	121772754	121798688
RHOF_chr12_121772754_121798688	0/0	t0050	1800	1	0	0	0	1	0	copy fasta	RHOF	chr12	121772754	121798688
RHOF_chr12_121772754_121798688	0/0	t0051	1799	1	1	0	0	0	0	copy fasta	RHOF	chr12	121772754	121798688
RHOF_chr12_121772754_121798688	0/0	t0052	1800	1	1	0	0	0	0	copy fasta	RHOF	chr12	121772754	121798688
RHOF_chr12_121772754_121798688	0/0	t0053	1800	1	1	0	0	0	0	copy fasta	RHOF	chr12	121772754	121798688
RHOF_chr12_121772754_121798688	0/0	t0054	1801	1	1	0	0	0	0	copy fasta	RHOF	chr12	121772754	121798688
RHOF_chr12_121772754_121798688	0/0	t0055	1800	1	1	0	0	0	0	copy fasta	RHOF	chr12	121772754	121798688
RHOG_chr11_3821978_3845959	1/1	t0001	720	431	79	71	222	14	43	copy fasta	RHOG	chr11	3821978	3845959
RHOG_chr11_3821978_3845959	0/0	t0002	720	26	13	7	0	2	4	copy fasta	RHOG	chr11	3821978	3845959
RHOG_chr11_3821978_3845959	0/0	t0003	720	5	4	1	0	0	0	copy fasta	RHOG	chr11	3821978	3845959
RHOG_chr11_3821978_3845959	0/0	t0004	736	1	0	0	1	0	0	copy fasta	RHOG	chr11	3821978	3845959
RHOG_chr11_3821978_3845959	0/0	t0005	720	1	0	0	1	0	0	copy fasta	RHOG	chr11	3821978	3845959
RHOG_chr11_3821978_3845959	0/0	t0006	720	1	1	0	0	0	0	copy fasta	RHOG	chr11	3821978	3845959
RHOG_chr11_3821978_3845959	0/0	t0007	720	1	0	1	0	0	0	copy fasta	RHOG	chr11	3821978	3845959
RHOG_chr11_3821978_3845959	0/0	t0008	720	1	1	0	0	0	0	copy fasta	RHOG	chr11	3821978	3845959
RHOG_chr11_3821978_3845959	0/0	t0009	720	1	0	0	0	0	1	copy fasta	RHOG	chr11	3821978	3845959
RHOH_chr4_40192031_40251967	0/0	t0001	3606	46	4	2	40	0	0	copy fasta	RHOH	chr4	40192031	40251967
RHOH_chr4_40192031_40251967	0/0	t0002	3603	43	3	10	26	1	3	copy fasta	RHOH	chr4	40192031	40251967
RHOH_chr4_40192031_40251967	0/0	t0003	3603	27	0	8	11	1	7	copy fasta	RHOH	chr4	40192031	40251967
RHOH_chr4_40192031_40251967	0/0	t0004	3606	20	0	2	17	1	0	copy fasta	RHOH	chr4	40192031	40251967
RHOH_chr4_40192031_40251967	0/0	t0005	3603	13	0	7	2	0	4	copy fasta	RHOH	chr4	40192031	40251967
RHOH_chr4_40192031_40251967	0/0	t0006	3606	11	0	0	11	0	0	copy fasta	RHOH	chr4	40192031	40251967
RHOH_chr4_40192031_40251967	0/0	t0007	3606	10	0	1	8	0	1	copy fasta	RHOH	chr4	40192031	40251967
RHOH_chr4_40192031_40251967	0/0	t0008	3606	10	1	2	5	0	2	copy fasta	RHOH	chr4	40192031	40251967
RHOH_chr4_40192031_40251967	0/0	t0009	3602	9	0	1	8	0	0	copy fasta	RHOH	chr4	40192031	40251967
RHOH_chr4_40192031_40251967	0/0	t0010	3608	7	1	3	0	0	3	copy fasta	RHOH	chr4	40192031	40251967
RHOH_chr4_40192031_40251967	0/0	t0011	3606	7	0	1	6	0	0	copy fasta	RHOH	chr4	40192031	40251967
RHOH_chr4_40192031_40251967	0/0	t0012	3602	7	0	4	3	0	0	copy fasta	RHOH	chr4	40192031	40251967
RHOH_chr4_40192031_40251967	0/0	t0013	3602	6	0	4	0	0	2	copy fasta	RHOH	chr4	40192031	40251967
RHOH_chr4_40192031_40251967	0/0	t0014	3608	5	0	0	5	0	0	copy fasta	RHOH	chr4	40192031	40251967
RHOH_chr4_40192031_40251967	0/0	t0015	3606	4	0	0	4	0	0	copy fasta	RHOH	chr4	40192031	40251967
RHOH_chr4_40192031_40251967	0/0	t0016	3603	4	0	0	3	0	1	copy fasta	RHOH	chr4	40192031	40251967
RHOH_chr4_40192031_40251967	1/0	t0017	3606	4	0	2	0	1	0	copy fasta	RHOH	chr4	40192031	40251967
RHOH_chr4_40192031_40251967	0/0	t0018	3608	4	0	0	4	0	0	copy fasta	RHOH	chr4	40192031	40251967
RHOH_chr4_40192031_40251967	0/0	t0019	3602	3	0	1	1	0	1	copy fasta	RHOH	chr4	40192031	40251967