JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RHOH_chr4_40192031_40251967	0/0	t0070	3603	1	1	0	0	0	0	copy fasta	RHOH	chr4	40192031	40251967
RHOH_chr4_40192031_40251967	0/0	t0071	3603	1	1	0	0	0	0	copy fasta	RHOH	chr4	40192031	40251967
RHOH_chr4_40192031_40251967	0/0	t0072	3606	1	0	0	1	0	0	copy fasta	RHOH	chr4	40192031	40251967
RHOH_chr4_40192031_40251967	0/0	t0073	3603	1	0	0	0	0	1	copy fasta	RHOH	chr4	40192031	40251967
RHOJ_chr14_63199443_63298508	0/0	t0001	2912	88	8	19	49	4	8	copy fasta	RHOJ	chr14	63199443	63298508
RHOJ_chr14_63199443_63298508	0/0	t0002	2912	37	10	2	23	1	1	copy fasta	RHOJ	chr14	63199443	63298508
RHOJ_chr14_63199443_63298508	0/0	t0003	2912	34	1	6	22	1	4	copy fasta	RHOJ	chr14	63199443	63298508
RHOJ_chr14_63199443_63298508	0/0	t0004	2912	21	0	3	18	0	0	copy fasta	RHOJ	chr14	63199443	63298508
RHOJ_chr14_63199443_63298508	0/1	t0005	2912	19	7	4	4	2	1	copy fasta	RHOJ	chr14	63199443	63298508
RHOJ_chr14_63199443_63298508	0/0	t0006	2913	15	12	3	0	0	0	copy fasta	RHOJ	chr14	63199443	63298508
RHOJ_chr14_63199443_63298508	0/0	t0007	2912	14	13	1	0	0	0	copy fasta	RHOJ	chr14	63199443	63298508
RHOJ_chr14_63199443_63298508	0/0	t0008	2913	10	2	0	8	0	0	copy fasta	RHOJ	chr14	63199443	63298508
RHOJ_chr14_63199443_63298508	0/0	t0009	2912	8	3	5	0	0	0	copy fasta	RHOJ	chr14	63199443	63298508
RHOJ_chr14_63199443_63298508	0/0	t0010	2913	7	0	0	7	0	0	copy fasta	RHOJ	chr14	63199443	63298508
RHOJ_chr14_63199443_63298508	0/0	t0011	2913	6	0	0	6	0	0	copy fasta	RHOJ	chr14	63199443	63298508
RHOJ_chr14_63199443_63298508	0/0	t0012	2912	6	5	1	0	0	0	copy fasta	RHOJ	chr14	63199443	63298508
RHOJ_chr14_63199443_63298508	0/0	t0013	2912	5	5	0	0	0	0	copy fasta	RHOJ	chr14	63199443	63298508
RHOJ_chr14_63199443_63298508	0/0	t0014	2913	5	4	1	0	0	0	copy fasta	RHOJ	chr14	63199443	63298508
RHOJ_chr14_63199443_63298508	0/0	t0015	2914	4	4	0	0	0	0	copy fasta	RHOJ	chr14	63199443	63298508
RHOJ_chr14_63199443_63298508	0/0	t0016	2913	4	4	0	0	0	0	copy fasta	RHOJ	chr14	63199443	63298508
RHOJ_chr14_63199443_63298508	0/0	t0017	2913	3	2	1	0	0	0	copy fasta	RHOJ	chr14	63199443	63298508
RHOJ_chr14_63199443_63298508	0/0	t0018	2912	3	0	0	3	0	0	copy fasta	RHOJ	chr14	63199443	63298508
RHOJ_chr14_63199443_63298508	0/0	t0019	2912	3	2	1	0	0	0	copy fasta	RHOJ	chr14	63199443	63298508
RHOJ_chr14_63199443_63298508	1/0	t0020	2912	2	1	0	0	0	0	copy fasta	RHOJ	chr14	63199443	63298508
RHOJ_chr14_63199443_63298508	0/0	t0021	2913	2	0	0	2	0	0	copy fasta	RHOJ	chr14	63199443	63298508
RHOJ_chr14_63199443_63298508	0/0	t0022	2912	2	0	0	2	0	0	copy fasta	RHOJ	chr14	63199443	63298508
RHOJ_chr14_63199443_63298508	0/0	t0023	2913	2	1	1	0	0	0	copy fasta	RHOJ	chr14	63199443	63298508
RHOJ_chr14_63199443_63298508	0/0	t0024	2912	1	0	0	0	0	1	copy fasta	RHOJ	chr14	63199443	63298508
RHOJ_chr14_63199443_63298508	0/0	t0025	2914	1	1	0	0	0	0	copy fasta	RHOJ	chr14	63199443	63298508
RHOJ_chr14_63199443_63298508	0/0	t0026	2912	1	0	0	0	0	1	copy fasta	RHOJ	chr14	63199443	63298508
RHOJ_chr14_63199443_63298508	0/0	t0027	2912	1	0	0	1	0	0	copy fasta	RHOJ	chr14	63199443	63298508
RHOJ_chr14_63199443_63298508	0/0	t0028	2912	1	1	0	0	0	0	copy fasta	RHOJ	chr14	63199443	63298508
RHOJ_chr14_63199443_63298508	0/0	t0029	2912	1	0	0	1	0	0	copy fasta	RHOJ	chr14	63199443	63298508
RHOJ_chr14_63199443_63298508	0/0	t0030	2913	1	1	0	0	0	0	copy fasta	RHOJ	chr14	63199443	63298508
RHOJ_chr14_63199443_63298508	0/0	t0031	2914	1	1	0	0	0	0	copy fasta	RHOJ	chr14	63199443	63298508
RHOJ_chr14_63199443_63298508	0/0	t0032	2912	1	0	0	1	0	0	copy fasta	RHOJ	chr14	63199443	63298508
RHOJ_chr14_63199443_63298508	0/0	t0033	2913	1	1	0	0	0	0	copy fasta	RHOJ	chr14	63199443	63298508
RHOJ_chr14_63199443_63298508	0/0	t0034	2913	1	1	0	0	0	0	copy fasta	RHOJ	chr14	63199443	63298508
RHOJ_chr14_63199443_63298508	0/0	t0035	2912	1	0	0	1	0	0	copy fasta	RHOJ	chr14	63199443	63298508
RHOJ_chr14_63199443_63298508	0/0	t0036	2912	1	0	0	1	0	0	copy fasta	RHOJ	chr14	63199443	63298508
RHOJ_chr14_63199443_63298508	0/0	t0037	2913	1	0	0	1	0	0	copy fasta	RHOJ	chr14	63199443	63298508
RHOJ_chr14_63199443_63298508	0/0	t0038	2912	1	1	0	0	0	0	copy fasta	RHOJ	chr14	63199443	63298508
RHOJ_chr14_63199443_63298508	0/0	t0039	2913	1	1	0	0	0	0	copy fasta	RHOJ	chr14	63199443	63298508
RHOJ_chr14_63199443_63298508	0/0	t0040	2913	1	1	0	0	0	0	copy fasta	RHOJ	chr14	63199443	63298508
RHOJ_chr14_63199443_63298508	0/0	t0041	2912	1	1	0	0	0	0	copy fasta	RHOJ	chr14	63199443	63298508
RHOJ_chr14_63199443_63298508	0/0	t0042	2912	1	1	0	0	0	0	copy fasta	RHOJ	chr14	63199443	63298508
RHOJ_chr14_63199443_63298508	0/0	t0043	2912	1	1	0	0	0	0	copy fasta	RHOJ	chr14	63199443	63298508
RHOQ_chr2_46537490_46589688	0/1	t0001	4163	105	15	27	54	3	5	copy fasta	RHOQ	chr2	46537490	46589688
RHOQ_chr2_46537490_46589688	1/0	t0002	4163	63	16	17	18	3	8	copy fasta	RHOQ	chr2	46537490	46589688
RHOQ_chr2_46537490_46589688	0/0	t0003	4163	60	30	5	14	3	8	copy fasta	RHOQ	chr2	46537490	46589688