JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RHOQ_chr2_46537490_46589688	0/0	t0004	4161	42	1	19	13	2	7	copy fasta	RHOQ	chr2	46537490	46589688
RHOQ_chr2_46537490_46589688	0/0	t0005	4163	11	11	0	0	0	0	copy fasta	RHOQ	chr2	46537490	46589688
RHOQ_chr2_46537490_46589688	0/0	t0006	4161	9	1	2	6	0	0	copy fasta	RHOQ	chr2	46537490	46589688
RHOQ_chr2_46537490_46589688	0/0	t0007	4163	8	7	1	0	0	0	copy fasta	RHOQ	chr2	46537490	46589688
RHOQ_chr2_46537490_46589688	0/0	t0008	4163	5	4	0	0	1	0	copy fasta	RHOQ	chr2	46537490	46589688
RHOQ_chr2_46537490_46589688	0/0	t0009	4163	4	3	1	0	0	0	copy fasta	RHOQ	chr2	46537490	46589688
RHOQ_chr2_46537490_46589688	0/0	t0010	4163	4	0	0	4	0	0	copy fasta	RHOQ	chr2	46537490	46589688
RHOQ_chr2_46537490_46589688	0/0	t0011	4163	3	3	0	0	0	0	copy fasta	RHOQ	chr2	46537490	46589688
RHOQ_chr2_46537490_46589688	0/0	t0012	4163	3	3	0	0	0	0	copy fasta	RHOQ	chr2	46537490	46589688
RHOQ_chr2_46537490_46589688	0/0	t0013	4163	2	0	0	0	0	2	copy fasta	RHOQ	chr2	46537490	46589688
RHOQ_chr2_46537490_46589688	0/0	t0014	4163	1	1	0	0	0	0	copy fasta	RHOQ	chr2	46537490	46589688
RHOQ_chr2_46537490_46589688	0/0	t0015	4163	1	0	0	0	0	1	copy fasta	RHOQ	chr2	46537490	46589688
RHOQ_chr2_46537490_46589688	0/0	t0016	4163	1	0	0	1	0	0	copy fasta	RHOQ	chr2	46537490	46589688
RHOQ_chr2_46537490_46589688	0/0	t0017	4163	1	0	1	0	0	0	copy fasta	RHOQ	chr2	46537490	46589688
RHOQ_chr2_46537490_46589688	0/0	t0018	4163	1	0	0	1	0	0	copy fasta	RHOQ	chr2	46537490	46589688
RHOQ_chr2_46537490_46589688	0/0	t0019	4163	1	0	1	0	0	0	copy fasta	RHOQ	chr2	46537490	46589688
RHOQ_chr2_46537490_46589688	0/0	t0020	4163	1	1	0	0	0	0	copy fasta	RHOQ	chr2	46537490	46589688
RHOQ_chr2_46537490_46589688	0/0	t0021	4163	1	0	0	0	0	1	copy fasta	RHOQ	chr2	46537490	46589688
RHOQ_chr2_46537490_46589688	0/0	t0022	4163	1	1	0	0	0	0	copy fasta	RHOQ	chr2	46537490	46589688
RHOQ_chr2_46537490_46589688	0/0	t0023	4163	1	0	0	1	0	0	copy fasta	RHOQ	chr2	46537490	46589688
RHOQ_chr2_46537490_46589688	0/0	t0024	4163	1	1	0	0	0	0	copy fasta	RHOQ	chr2	46537490	46589688
RHOQ_chr2_46537490_46589688	0/0	t0025	4161	1	0	1	0	0	0	copy fasta	RHOQ	chr2	46537490	46589688
RHOQ_chr2_46537490_46589688	0/0	t0026	4163	1	0	1	0	0	0	copy fasta	RHOQ	chr2	46537490	46589688
RHOT1_chr17_32137502_32230727	1/1	t0001	1186	260	74	42	111	8	23	copy fasta	RHOT1	chr17	32137502	32230727
RHOT1_chr17_32137502_32230727	0/0	t0002	1186	7	7	0	0	0	0	copy fasta	RHOT1	chr17	32137502	32230727
RHOT1_chr17_32137502_32230727	0/0	t0003	1186	5	5	0	0	0	0	copy fasta	RHOT1	chr17	32137502	32230727
RHOT1_chr17_32137502_32230727	0/0	t0004	1186	3	3	0	0	0	0	copy fasta	RHOT1	chr17	32137502	32230727
RHOT1_chr17_32137502_32230727	0/0	t0005	1186	2	0	0	0	0	2	copy fasta	RHOT1	chr17	32137502	32230727
RHOT1_chr17_32137502_32230727	0/0	t0006	1186	1	0	0	1	0	0	copy fasta	RHOT1	chr17	32137502	32230727
RHOT1_chr17_32137502_32230727	0/0	t0007	1186	1	0	0	1	0	0	copy fasta	RHOT1	chr17	32137502	32230727
RHOT1_chr17_32137502_32230727	0/0	t0008	1186	1	0	0	1	0	0	copy fasta	RHOT1	chr17	32137502	32230727
RHOT1_chr17_32137502_32230727	0/0	t0009	1186	1	1	0	0	0	0	copy fasta	RHOT1	chr17	32137502	32230727
RHOT1_chr17_32137502_32230727	0/0	t0010	1186	1	1	0	0	0	0	copy fasta	RHOT1	chr17	32137502	32230727
RHOT1_chr17_32137502_32230727	0/0	t0011	1186	1	1	0	0	0	0	copy fasta	RHOT1	chr17	32137502	32230727
RHOT1_chr17_32137502_32230727	0/0	t0012	1186	1	0	0	0	0	1	copy fasta	RHOT1	chr17	32137502	32230727
RHOT2_chr16_663132_679171	0/0	t0001	634	198	79	32	63	4	20	copy fasta	RHOT2	chr16	663132	679171
RHOT2_chr16_663132_679171	0/0	t0002	634	104	0	12	81	1	10	copy fasta	RHOT2	chr16	663132	679171
RHOT2_chr16_663132_679171	1/1	t0003	634	55	7	25	0	5	16	copy fasta	RHOT2	chr16	663132	679171
RHOT2_chr16_663132_679171	0/0	t0004	634	6	6	0	0	0	0	copy fasta	RHOT2	chr16	663132	679171
RHOT2_chr16_663132_679171	0/0	t0005	634	3	0	0	3	0	0	copy fasta	RHOT2	chr16	663132	679171
RHOT2_chr16_663132_679171	0/0	t0006	634	2	0	0	0	0	2	copy fasta	RHOT2	chr16	663132	679171
RHOT2_chr16_663132_679171	0/0	t0007	634	2	2	0	0	0	0	copy fasta	RHOT2	chr16	663132	679171
RHOT2_chr16_663132_679171	0/0	t0008	634	2	0	0	2	0	0	copy fasta	RHOT2	chr16	663132	679171
RHOT2_chr16_663132_679171	0/0	t0009	634	2	2	0	0	0	0	copy fasta	RHOT2	chr16	663132	679171
RHOT2_chr16_663132_679171	0/0	t0010	634	1	0	1	0	0	0	copy fasta	RHOT2	chr16	663132	679171
RHOT2_chr16_663132_679171	0/0	t0011	634	1	1	0	0	0	0	copy fasta	RHOT2	chr16	663132	679171
RHOT2_chr16_663132_679171	0/0	t0012	634	1	0	0	1	0	0	copy fasta	RHOT2	chr16	663132	679171
RHOT2_chr16_663132_679171	0/0	t0013	634	1	0	0	1	0	0	copy fasta	RHOT2	chr16	663132	679171
RHOT2_chr16_663132_679171	0/0	t0014	634	1	1	0	0	0	0	copy fasta	RHOT2	chr16	663132	679171
RHOT2_chr16_663132_679171	0/0	t0015	634	1	0	0	1	0	0	copy fasta	RHOT2	chr16	663132	679171