JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RHOU_chr1_228730479_228751664	1/0	t0001	3189	164	22	35	84	4	18	copy fasta	RHOU	chr1	228730479	228751664
RHOU_chr1_228730479_228751664	0/1	t0002	3189	90	25	14	40	3	7	copy fasta	RHOU	chr1	228730479	228751664
RHOU_chr1_228730479_228751664	0/0	t0003	3189	32	5	4	11	1	11	copy fasta	RHOU	chr1	228730479	228751664
RHOU_chr1_228730479_228751664	0/0	t0004	3189	30	12	8	7	1	2	copy fasta	RHOU	chr1	228730479	228751664
RHOU_chr1_228730479_228751664	0/0	t0005	3189	19	2	2	14	0	1	copy fasta	RHOU	chr1	228730479	228751664
RHOU_chr1_228730479_228751664	0/0	t0006	3189	8	7	1	0	0	0	copy fasta	RHOU	chr1	228730479	228751664
RHOU_chr1_228730479_228751664	0/0	t0007	3190	6	6	0	0	0	0	copy fasta	RHOU	chr1	228730479	228751664
RHOU_chr1_228730479_228751664	0/0	t0008	3189	5	2	0	3	0	0	copy fasta	RHOU	chr1	228730479	228751664
RHOU_chr1_228730479_228751664	0/0	t0009	3189	4	2	2	0	0	0	copy fasta	RHOU	chr1	228730479	228751664
RHOU_chr1_228730479_228751664	0/0	t0010	3189	3	3	0	0	0	0	copy fasta	RHOU	chr1	228730479	228751664
RHOU_chr1_228730479_228751664	0/0	t0011	3189	2	0	2	0	0	0	copy fasta	RHOU	chr1	228730479	228751664
RHOU_chr1_228730479_228751664	0/0	t0012	3189	2	1	1	0	0	0	copy fasta	RHOU	chr1	228730479	228751664
RHOU_chr1_228730479_228751664	0/0	t0013	3189	2	2	0	0	0	0	copy fasta	RHOU	chr1	228730479	228751664
RHOU_chr1_228730479_228751664	0/0	t0014	3189	1	0	1	0	0	0	copy fasta	RHOU	chr1	228730479	228751664
RHOU_chr1_228730479_228751664	0/0	t0015	3189	1	0	0	1	0	0	copy fasta	RHOU	chr1	228730479	228751664
RHOU_chr1_228730479_228751664	0/0	t0016	3189	1	0	0	1	0	0	copy fasta	RHOU	chr1	228730479	228751664
RHOU_chr1_228730479_228751664	0/0	t0017	3189	1	0	0	1	0	0	copy fasta	RHOU	chr1	228730479	228751664
RHOU_chr1_228730479_228751664	0/0	t0018	3189	1	0	1	0	0	0	copy fasta	RHOU	chr1	228730479	228751664
RHOU_chr1_228730479_228751664	0/0	t0019	3189	1	0	0	1	0	0	copy fasta	RHOU	chr1	228730479	228751664
RHOU_chr1_228730479_228751664	0/0	t0020	3189	1	0	0	1	0	0	copy fasta	RHOU	chr1	228730479	228751664
RHOU_chr1_228730479_228751664	0/0	t0021	3189	1	1	0	0	0	0	copy fasta	RHOU	chr1	228730479	228751664
RHOU_chr1_228730479_228751664	0/0	t0022	3189	1	0	1	0	0	0	copy fasta	RHOU	chr1	228730479	228751664
RHOU_chr1_228730479_228751664	0/0	t0023	3189	1	0	0	0	1	0	copy fasta	RHOU	chr1	228730479	228751664
RHOU_chr1_228730479_228751664	0/0	t0024	3189	1	0	0	0	0	1	copy fasta	RHOU	chr1	228730479	228751664
RHOU_chr1_228730479_228751664	0/0	t0025	3189	1	1	0	0	0	0	copy fasta	RHOU	chr1	228730479	228751664
RHOU_chr1_228730479_228751664	0/0	t0026	3189	1	1	0	0	0	0	copy fasta	RHOU	chr1	228730479	228751664
RHOV_chr15_40867214_40879234	1/1	t0001	940	320	78	55	140	13	32	copy fasta	RHOV	chr15	40867214	40879234
RHOV_chr15_40867214_40879234	0/0	t0002	940	30	11	0	18	0	1	copy fasta	RHOV	chr15	40867214	40879234
RHOV_chr15_40867214_40879234	0/0	t0003	940	3	0	1	0	1	1	copy fasta	RHOV	chr15	40867214	40879234
RHOV_chr15_40867214_40879234	0/0	t0004	940	3	0	0	3	0	0	copy fasta	RHOV	chr15	40867214	40879234
RHOV_chr15_40867214_40879234	0/0	t0005	940	2	0	0	2	0	0	copy fasta	RHOV	chr15	40867214	40879234
RHOV_chr15_40867214_40879234	0/0	t0006	958	1	1	0	0	0	0	copy fasta	RHOV	chr15	40867214	40879234
RHOV_chr15_40867214_40879234	0/0	t0007	940	1	1	0	0	0	0	copy fasta	RHOV	chr15	40867214	40879234
RHOV_chr15_40867214_40879234	0/0	t0008	940	1	1	0	0	0	0	copy fasta	RHOV	chr15	40867214	40879234
RHOV_chr15_40867214_40879234	0/0	t0009	940	1	0	0	1	0	0	copy fasta	RHOV	chr15	40867214	40879234
RHOXF1_chrX_120104051_120120913	1/1	t0001	193	318	78	51	146	9	32	copy fasta	RHOXF1	chrX	120104051	120120913
RHOXF1_chrX_120104051_120120913	0/0	t0002	193	1	0	0	1	0	0	copy fasta	RHOXF1	chrX	120104051	120120913
RHOXF1_chrX_120104051_120120913	0/0	t0003	193	1	0	1	0	0	0	copy fasta	RHOXF1	chrX	120104051	120120913
RHOXF2B_chrX_120067264_120082690	0/0	t0001	391	171	45	33	67	8	18	copy fasta	RHOXF2B	chrX	120067264	120082690
RHOXF2B_chrX_120067264_120082690	0/0	t0002	391	34	0	2	30	1	1	copy fasta	RHOXF2B	chrX	120067264	120082690
RHOXF2B_chrX_120067264_120082690	0/0	t0003	386	2	2	0	0	0	0	copy fasta	RHOXF2B	chrX	120067264	120082690
RHOXF2B_chrX_120067264_120082690	0/0	t0004	392	1	0	0	1	0	0	copy fasta	RHOXF2B	chrX	120067264	120082690
RHOXF2B_chrX_120067264_120082690	0/0	t0005	391	1	0	0	1	0	0	copy fasta	RHOXF2B	chrX	120067264	120082690
RHOXF2B_chrX_120067264_120082690	0/0	t0006	392	1	0	0	1	0	0	copy fasta	RHOXF2B	chrX	120067264	120082690
RHOXF2B_chrX_120067264_120082690	0/0	t0007	373	1	1	0	0	0	0	copy fasta	RHOXF2B	chrX	120067264	120082690
RHOXF2B_chrX_120067264_120082690	0/0	t0008	392	1	0	0	1	0	0	copy fasta	RHOXF2B	chrX	120067264	120082690
RHOXF2B_chrX_120067264_120082690	0/0	t0009	394	1	0	1	0	0	0	copy fasta	RHOXF2B	chrX	120067264	120082690
RHOXF2_chrX_120153613_120170630	0/0	t0001	1982	50	11	14	10	6	9	copy fasta	RHOXF2	chrX	120153613	120170630
RHOXF2_chrX_120153613_120170630	0/0	t0002	1983	18	10	3	4	0	1	copy fasta	RHOXF2	chrX	120153613	120170630
RHOXF2_chrX_120153613_120170630	0/0	t0003	1983	15	0	0	12	0	3	copy fasta	RHOXF2	chrX	120153613	120170630