JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RHOXF2_chrX_120153613_120170630	0/0	t0004	1975	12	0	0	9	0	3	copy fasta	RHOXF2	chrX	120153613	120170630
RHOXF2_chrX_120153613_120170630	0/0	t0005	1982	8	0	0	8	0	0	copy fasta	RHOXF2	chrX	120153613	120170630
RHOXF2_chrX_120153613_120170630	0/0	t0006	1979	6	6	0	0	0	0	copy fasta	RHOXF2	chrX	120153613	120170630
RHOXF2_chrX_120153613_120170630	0/0	t0007	1984	4	2	1	0	0	1	copy fasta	RHOXF2	chrX	120153613	120170630
RHOXF2_chrX_120153613_120170630	0/0	t0008	1984	3	0	1	0	0	2	copy fasta	RHOXF2	chrX	120153613	120170630
RHOXF2_chrX_120153613_120170630	0/0	t0009	1980	3	3	0	0	0	0	copy fasta	RHOXF2	chrX	120153613	120170630
RHOXF2_chrX_120153613_120170630	0/0	t0010	1980	3	2	1	0	0	0	copy fasta	RHOXF2	chrX	120153613	120170630
RHOXF2_chrX_120153613_120170630	0/0	t0011	1983	3	0	0	2	0	1	copy fasta	RHOXF2	chrX	120153613	120170630
RHOXF2_chrX_120153613_120170630	0/0	t0012	1976	2	0	0	2	0	0	copy fasta	RHOXF2	chrX	120153613	120170630
RHOXF2_chrX_120153613_120170630	0/0	t0013	1984	2	0	0	2	0	0	copy fasta	RHOXF2	chrX	120153613	120170630
RHOXF2_chrX_120153613_120170630	0/0	t0014	1986	2	1	1	0	0	0	copy fasta	RHOXF2	chrX	120153613	120170630
RHOXF2_chrX_120153613_120170630	0/0	t0015	1982	2	2	0	0	0	0	copy fasta	RHOXF2	chrX	120153613	120170630
RHOXF2_chrX_120153613_120170630	0/0	t0016	1975	2	1	1	0	0	0	copy fasta	RHOXF2	chrX	120153613	120170630
RHOXF2_chrX_120153613_120170630	0/0	t0017	1981	2	0	0	0	2	0	copy fasta	RHOXF2	chrX	120153613	120170630
RHOXF2_chrX_120153613_120170630	0/0	t0018	1983	2	2	0	0	0	0	copy fasta	RHOXF2	chrX	120153613	120170630
RHOXF2_chrX_120153613_120170630	0/0	t0019	1984	2	0	0	0	0	2	copy fasta	RHOXF2	chrX	120153613	120170630
RHOXF2_chrX_120153613_120170630	0/0	t0020	1986	2	0	1	0	0	1	copy fasta	RHOXF2	chrX	120153613	120170630
RHOXF2_chrX_120153613_120170630	0/0	t0021	1984	1	0	0	1	0	0	copy fasta	RHOXF2	chrX	120153613	120170630
RHOXF2_chrX_120153613_120170630	0/0	t0022	1974	1	0	0	0	0	1	copy fasta	RHOXF2	chrX	120153613	120170630
RHOXF2_chrX_120153613_120170630	0/0	t0023	1980	1	0	0	0	0	1	copy fasta	RHOXF2	chrX	120153613	120170630
RHOXF2_chrX_120153613_120170630	0/0	t0024	1983	1	0	0	1	0	0	copy fasta	RHOXF2	chrX	120153613	120170630
RHOXF2_chrX_120153613_120170630	0/0	t0025	1983	1	0	0	1	0	0	copy fasta	RHOXF2	chrX	120153613	120170630
RHOXF2_chrX_120153613_120170630	0/0	t0026	1984	1	0	0	1	0	0	copy fasta	RHOXF2	chrX	120153613	120170630
RHOXF2_chrX_120153613_120170630	0/0	t0027	1978	1	0	1	0	0	0	copy fasta	RHOXF2	chrX	120153613	120170630
RHOXF2_chrX_120153613_120170630	0/0	t0028	1980	1	0	0	1	0	0	copy fasta	RHOXF2	chrX	120153613	120170630
RHOXF2_chrX_120153613_120170630	0/0	t0029	1978	1	1	0	0	0	0	copy fasta	RHOXF2	chrX	120153613	120170630
RHOXF2_chrX_120153613_120170630	0/0	t0030	1979	1	1	0	0	0	0	copy fasta	RHOXF2	chrX	120153613	120170630
RHOXF2_chrX_120153613_120170630	0/0	t0031	1982	1	1	0	0	0	0	copy fasta	RHOXF2	chrX	120153613	120170630
RHOXF2_chrX_120153613_120170630	0/0	t0032	1982	1	1	0	0	0	0	copy fasta	RHOXF2	chrX	120153613	120170630
RHOXF2_chrX_120153613_120170630	0/0	t0033	1986	1	0	1	0	0	0	copy fasta	RHOXF2	chrX	120153613	120170630
RHOXF2_chrX_120153613_120170630	0/0	t0034	1987	1	0	1	0	0	0	copy fasta	RHOXF2	chrX	120153613	120170630
RHOXF2_chrX_120153613_120170630	0/0	t0035	1978	1	1	0	0	0	0	copy fasta	RHOXF2	chrX	120153613	120170630
RHOXF2_chrX_120153613_120170630	0/0	t0036	1989	1	0	0	1	0	0	copy fasta	RHOXF2	chrX	120153613	120170630
RHOXF2_chrX_120153613_120170630	0/0	t0037	1975	1	0	0	1	0	0	copy fasta	RHOXF2	chrX	120153613	120170630
RHOXF2_chrX_120153613_120170630	0/0	t0038	1976	1	0	1	0	0	0	copy fasta	RHOXF2	chrX	120153613	120170630
RHOXF2_chrX_120153613_120170630	0/0	t0039	1981	1	1	0	0	0	0	copy fasta	RHOXF2	chrX	120153613	120170630
RHOXF2_chrX_120153613_120170630	0/0	t0040	1982	1	0	1	0	0	0	copy fasta	RHOXF2	chrX	120153613	120170630
RHOXF2_chrX_120153613_120170630	0/0	t0041	1982	1	0	1	0	0	0	copy fasta	RHOXF2	chrX	120153613	120170630
RHOXF2_chrX_120153613_120170630	0/0	t0042	1982	1	1	0	0	0	0	copy fasta	RHOXF2	chrX	120153613	120170630
RHOXF2_chrX_120153613_120170630	0/0	t0043	1984	1	0	1	0	0	0	copy fasta	RHOXF2	chrX	120153613	120170630
RHOXF2_chrX_120153613_120170630	0/0	t0044	1983	1	0	1	0	0	0	copy fasta	RHOXF2	chrX	120153613	120170630
RHOXF2_chrX_120153613_120170630	0/0	t0045	1985	1	0	1	0	0	0	copy fasta	RHOXF2	chrX	120153613	120170630
RHOXF2_chrX_120153613_120170630	0/0	t0046	1985	1	1	0	0	0	0	copy fasta	RHOXF2	chrX	120153613	120170630
RHOXF2_chrX_120153613_120170630	0/0	t0047	1985	1	0	0	1	0	0	copy fasta	RHOXF2	chrX	120153613	120170630
RHOXF2_chrX_120153613_120170630	0/0	t0048	1981	1	0	0	1	0	0	copy fasta	RHOXF2	chrX	120153613	120170630
RHOXF2_chrX_120153613_120170630	0/0	t0049	1982	1	0	1	0	0	0	copy fasta	RHOXF2	chrX	120153613	120170630
RHOXF2_chrX_120153613_120170630	0/0	t0050	1981	1	1	0	0	0	0	copy fasta	RHOXF2	chrX	120153613	120170630
RHOXF2_chrX_120153613_120170630	0/0	t0051	1983	1	1	0	0	0	0	copy fasta	RHOXF2	chrX	120153613	120170630
RHOXF2_chrX_120153613_120170630	0/0	t0052	1985	1	0	1	0	0	0	copy fasta	RHOXF2	chrX	120153613	120170630
RHOXF2_chrX_120153613_120170630	0/0	t0053	1986	1	1	0	0	0	0	copy fasta	RHOXF2	chrX	120153613	120170630