JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RHOXF2_chrX_120153613_120170630	0/0	t0054	1986	1	0	0	0	0	1	copy fasta	RHOXF2	chrX	120153613	120170630
RHO_chr3_129523639_129540344	1/0	t0001	1722	114	3	30	45	9	26	copy fasta	RHO	chr3	129523639	129540344
RHO_chr3_129523639_129540344	0/0	t0002	1702	54	1	2	48	0	3	copy fasta	RHO	chr3	129523639	129540344
RHO_chr3_129523639_129540344	0/0	t0003	1703	50	11	1	33	0	5	copy fasta	RHO	chr3	129523639	129540344
RHO_chr3_129523639_129540344	0/0	t0004	1722	35	0	2	33	0	0	copy fasta	RHO	chr3	129523639	129540344
RHO_chr3_129523639_129540344	0/0	t0005	1703	27	7	7	13	0	0	copy fasta	RHO	chr3	129523639	129540344
RHO_chr3_129523639_129540344	0/0	t0006	1721	27	13	5	4	3	2	copy fasta	RHO	chr3	129523639	129540344
RHO_chr3_129523639_129540344	0/1	t0007	1703	23	6	4	5	2	5	copy fasta	RHO	chr3	129523639	129540344
RHO_chr3_129523639_129540344	0/0	t0008	1721	14	12	2	0	0	0	copy fasta	RHO	chr3	129523639	129540344
RHO_chr3_129523639_129540344	0/0	t0009	1702	7	4	0	2	0	1	copy fasta	RHO	chr3	129523639	129540344
RHO_chr3_129523639_129540344	0/0	t0010	1720	6	0	6	0	0	0	copy fasta	RHO	chr3	129523639	129540344
RHO_chr3_129523639_129540344	0/0	t0011	1721	6	0	1	2	0	3	copy fasta	RHO	chr3	129523639	129540344
RHO_chr3_129523639_129540344	0/0	t0012	1721	6	6	0	0	0	0	copy fasta	RHO	chr3	129523639	129540344
RHO_chr3_129523639_129540344	0/0	t0013	1702	4	0	0	4	0	0	copy fasta	RHO	chr3	129523639	129540344
RHO_chr3_129523639_129540344	0/0	t0014	1704	4	0	0	3	0	1	copy fasta	RHO	chr3	129523639	129540344
RHO_chr3_129523639_129540344	0/0	t0015	1702	4	0	1	3	0	0	copy fasta	RHO	chr3	129523639	129540344
RHO_chr3_129523639_129540344	0/0	t0016	1722	3	0	0	3	0	0	copy fasta	RHO	chr3	129523639	129540344
RHO_chr3_129523639_129540344	0/0	t0017	1722	3	0	1	0	0	2	copy fasta	RHO	chr3	129523639	129540344
RHO_chr3_129523639_129540344	0/0	t0018	1721	3	1	2	0	0	0	copy fasta	RHO	chr3	129523639	129540344
RHO_chr3_129523639_129540344	0/0	t0019	1720	2	1	1	0	0	0	copy fasta	RHO	chr3	129523639	129540344
RHO_chr3_129523639_129540344	0/0	t0020	1722	2	1	1	0	0	0	copy fasta	RHO	chr3	129523639	129540344
RHO_chr3_129523639_129540344	0/0	t0021	1722	1	0	0	1	0	0	copy fasta	RHO	chr3	129523639	129540344
RHO_chr3_129523639_129540344	0/0	t0022	1702	1	0	0	1	0	0	copy fasta	RHO	chr3	129523639	129540344
RHO_chr3_129523639_129540344	0/0	t0023	1702	1	0	0	1	0	0	copy fasta	RHO	chr3	129523639	129540344
RHO_chr3_129523639_129540344	0/0	t0024	1702	1	0	1	0	0	0	copy fasta	RHO	chr3	129523639	129540344
RHO_chr3_129523639_129540344	0/0	t0025	1721	1	0	0	1	0	0	copy fasta	RHO	chr3	129523639	129540344
RHO_chr3_129523639_129540344	0/0	t0026	1703	1	0	0	1	0	0	copy fasta	RHO	chr3	129523639	129540344
RHO_chr3_129523639_129540344	0/0	t0027	1722	1	0	0	1	0	0	copy fasta	RHO	chr3	129523639	129540344
RHO_chr3_129523639_129540344	0/0	t0028	1703	1	0	1	0	0	0	copy fasta	RHO	chr3	129523639	129540344
RHO_chr3_129523639_129540344	0/0	t0029	1627	1	0	0	1	0	0	copy fasta	RHO	chr3	129523639	129540344
RHO_chr3_129523639_129540344	0/0	t0030	1722	1	0	0	1	0	0	copy fasta	RHO	chr3	129523639	129540344
RHPN1_chr8_143363876_143389221	0/0	t0001	1683	93	5	20	52	2	14	copy fasta	RHPN1	chr8	143363876	143389221
RHPN1_chr8_143363876_143389221	0/1	t0002	1681	84	2	25	46	1	9	copy fasta	RHPN1	chr8	143363876	143389221
RHPN1_chr8_143363876_143389221	0/0	t0003	1683	58	5	9	38	1	5	copy fasta	RHPN1	chr8	143363876	143389221
RHPN1_chr8_143363876_143389221	0/0	t0004	1683	43	4	6	25	1	7	copy fasta	RHPN1	chr8	143363876	143389221
RHPN1_chr8_143363876_143389221	1/0	t0005	1683	30	28	1	0	0	0	copy fasta	RHPN1	chr8	143363876	143389221
RHPN1_chr8_143363876_143389221	0/0	t0006	1683	29	2	8	15	2	2	copy fasta	RHPN1	chr8	143363876	143389221
RHPN1_chr8_143363876_143389221	0/0	t0007	1683	19	19	0	0	0	0	copy fasta	RHPN1	chr8	143363876	143389221
RHPN1_chr8_143363876_143389221	0/0	t0008	1683	11	10	1	0	0	0	copy fasta	RHPN1	chr8	143363876	143389221
RHPN1_chr8_143363876_143389221	0/0	t0009	1704	10	9	1	0	0	0	copy fasta	RHPN1	chr8	143363876	143389221
RHPN1_chr8_143363876_143389221	0/0	t0010	1683	8	0	5	0	0	3	copy fasta	RHPN1	chr8	143363876	143389221
RHPN1_chr8_143363876_143389221	0/0	t0011	1683	6	6	0	0	0	0	copy fasta	RHPN1	chr8	143363876	143389221
RHPN1_chr8_143363876_143389221	0/0	t0012	1683	5	0	0	5	0	0	copy fasta	RHPN1	chr8	143363876	143389221
RHPN1_chr8_143363876_143389221	0/0	t0013	1683	4	0	0	4	0	0	copy fasta	RHPN1	chr8	143363876	143389221
RHPN1_chr8_143363876_143389221	0/0	t0014	1683	3	0	0	3	0	0	copy fasta	RHPN1	chr8	143363876	143389221
RHPN1_chr8_143363876_143389221	0/0	t0015	1679	3	1	0	0	2	0	copy fasta	RHPN1	chr8	143363876	143389221
RHPN1_chr8_143363876_143389221	0/0	t0016	1683	2	0	0	0	1	1	copy fasta	RHPN1	chr8	143363876	143389221
RHPN1_chr8_143363876_143389221	0/0	t0017	1681	2	0	1	0	1	0	copy fasta	RHPN1	chr8	143363876	143389221
RHPN1_chr8_143363876_143389221	0/0	t0018	1683	2	1	0	0	1	0	copy fasta	RHPN1	chr8	143363876	143389221
RHPN1_chr8_143363876_143389221	0/0	t0019	1683	1	0	0	1	0	0	copy fasta	RHPN1	chr8	143363876	143389221