JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RHPN1_chr8_143363876_143389221	0/0	t0020	1683	1	1	0	0	0	0	copy fasta	RHPN1	chr8	143363876	143389221
RHPN1_chr8_143363876_143389221	0/0	t0021	1683	1	0	0	1	0	0	copy fasta	RHPN1	chr8	143363876	143389221
RHPN1_chr8_143363876_143389221	0/0	t0022	1681	1	0	0	1	0	0	copy fasta	RHPN1	chr8	143363876	143389221
RHPN1_chr8_143363876_143389221	0/0	t0023	1683	1	1	0	0	0	0	copy fasta	RHPN1	chr8	143363876	143389221
RHPN1_chr8_143363876_143389221	0/0	t0024	1681	1	0	0	1	0	0	copy fasta	RHPN1	chr8	143363876	143389221
RHPN1_chr8_143363876_143389221	0/0	t0025	1664	1	0	0	0	0	1	copy fasta	RHPN1	chr8	143363876	143389221
RHPN1_chr8_143363876_143389221	0/0	t0026	1683	1	0	0	1	0	0	copy fasta	RHPN1	chr8	143363876	143389221
RHPN1_chr8_143363876_143389221	0/0	t0027	1683	1	1	0	0	0	0	copy fasta	RHPN1	chr8	143363876	143389221
RHPN1_chr8_143363876_143389221	0/0	t0028	1683	1	1	0	0	0	0	copy fasta	RHPN1	chr8	143363876	143389221
RHPN1_chr8_143363876_143389221	0/0	t0029	1704	1	0	1	0	0	0	copy fasta	RHPN1	chr8	143363876	143389221
RHPN1_chr8_143363876_143389221	0/0	t0030	1704	1	1	0	0	0	0	copy fasta	RHPN1	chr8	143363876	143389221
RHPN1_chr8_143363876_143389221	0/0	t0031	1704	1	1	0	0	0	0	copy fasta	RHPN1	chr8	143363876	143389221
RHPN1_chr8_143363876_143389221	0/0	t0032	1683	1	0	0	1	0	0	copy fasta	RHPN1	chr8	143363876	143389221
RHPN2_chr19_32973592_33069888	0/0	t0001	1441	116	21	15	49	10	21	copy fasta	RHPN2	chr19	32973592	33069888
RHPN2_chr19_32973592_33069888	1/1	t0002	1441	106	16	27	51	3	7	copy fasta	RHPN2	chr19	32973592	33069888
RHPN2_chr19_32973592_33069888	0/0	t0003	1441	37	26	3	4	0	4	copy fasta	RHPN2	chr19	32973592	33069888
RHPN2_chr19_32973592_33069888	0/0	t0004	1441	31	3	3	22	1	2	copy fasta	RHPN2	chr19	32973592	33069888
RHPN2_chr19_32973592_33069888	0/0	t0005	1441	21	10	3	0	2	6	copy fasta	RHPN2	chr19	32973592	33069888
RHPN2_chr19_32973592_33069888	0/0	t0006	1441	4	0	0	4	0	0	copy fasta	RHPN2	chr19	32973592	33069888
RHPN2_chr19_32973592_33069888	0/0	t0007	1441	4	1	2	0	0	1	copy fasta	RHPN2	chr19	32973592	33069888
RHPN2_chr19_32973592_33069888	0/0	t0008	1441	1	0	0	0	0	1	copy fasta	RHPN2	chr19	32973592	33069888
RHPN2_chr19_32973592_33069888	0/0	t0009	1441	1	0	1	0	0	0	copy fasta	RHPN2	chr19	32973592	33069888
RHPN2_chr19_32973592_33069888	0/0	t0010	1441	1	1	0	0	0	0	copy fasta	RHPN2	chr19	32973592	33069888
RHPN2_chr19_32973592_33069888	0/0	t0011	1441	1	1	0	0	0	0	copy fasta	RHPN2	chr19	32973592	33069888
RHPN2_chr19_32973592_33069888	0/0	t0012	1441	1	1	0	0	0	0	copy fasta	RHPN2	chr19	32973592	33069888
RHPN2_chr19_32973592_33069888	0/0	t0013	1441	1	1	0	0	0	0	copy fasta	RHPN2	chr19	32973592	33069888
RHPN2_chr19_32973592_33069888	0/0	t0014	1441	1	1	0	0	0	0	copy fasta	RHPN2	chr19	32973592	33069888
RIBC1_chrX_53417873_53436115	1/1	t0001	349	270	60	50	119	9	30	copy fasta	RIBC1	chrX	53417873	53436115
RIBC1_chrX_53417873_53436115	0/0	t0002	346	4	0	0	4	0	0	copy fasta	RIBC1	chrX	53417873	53436115
RIBC1_chrX_53417873_53436115	0/0	t0003	348	1	0	0	1	0	0	copy fasta	RIBC1	chrX	53417873	53436115
RIBC1_chrX_53417873_53436115	0/0	t0004	346	1	0	0	1	0	0	copy fasta	RIBC1	chrX	53417873	53436115
RIBC2_chr22_45408693_45437509	0/1	t0001	342	216	74	27	90	2	22	copy fasta	RIBC2	chr22	45408693	45437509
RIBC2_chr22_45408693_45437509	1/0	t0002	342	143	11	33	70	11	17	copy fasta	RIBC2	chr22	45408693	45437509
RIBC2_chr22_45408693_45437509	0/0	t0003	342	48	11	7	26	1	3	copy fasta	RIBC2	chr22	45408693	45437509
RIBC2_chr22_45408693_45437509	0/0	t0004	342	8	0	0	8	0	0	copy fasta	RIBC2	chr22	45408693	45437509
RIBC2_chr22_45408693_45437509	0/0	t0005	342	7	0	2	0	2	3	copy fasta	RIBC2	chr22	45408693	45437509
RIBC2_chr22_45408693_45437509	0/0	t0006	342	1	0	0	0	0	1	copy fasta	RIBC2	chr22	45408693	45437509
RIBC2_chr22_45408693_45437509	0/0	t0007	342	1	0	1	0	0	0	copy fasta	RIBC2	chr22	45408693	45437509
RIC1_chr9_5624107_5781557	1/0	t0001	2515	109	21	29	46	4	8	copy fasta	RIC1	chr9	5624107	5781557
RIC1_chr9_5624107_5781557	0/1	t0002	2515	86	3	13	55	6	8	copy fasta	RIC1	chr9	5624107	5781557
RIC1_chr9_5624107_5781557	0/0	t0003	2515	40	9	5	11	2	13	copy fasta	RIC1	chr9	5624107	5781557
RIC1_chr9_5624107_5781557	0/0	t0004	2515	20	0	3	14	0	3	copy fasta	RIC1	chr9	5624107	5781557
RIC1_chr9_5624107_5781557	0/0	t0005	2515	17	16	1	0	0	0	copy fasta	RIC1	chr9	5624107	5781557
RIC1_chr9_5624107_5781557	0/0	t0006	2515	15	12	1	0	0	2	copy fasta	RIC1	chr9	5624107	5781557
RIC1_chr9_5624107_5781557	0/0	t0007	2515	8	5	2	0	0	1	copy fasta	RIC1	chr9	5624107	5781557
RIC1_chr9_5624107_5781557	0/0	t0008	2515	4	3	0	1	0	0	copy fasta	RIC1	chr9	5624107	5781557
RIC1_chr9_5624107_5781557	0/0	t0009	2515	3	2	1	0	0	0	copy fasta	RIC1	chr9	5624107	5781557
RIC1_chr9_5624107_5781557	0/0	t0010	2515	2	2	0	0	0	0	copy fasta	RIC1	chr9	5624107	5781557
RIC1_chr9_5624107_5781557	0/0	t0011	2515	2	2	0	0	0	0	copy fasta	RIC1	chr9	5624107	5781557
RIC1_chr9_5624107_5781557	0/0	t0012	2515	2	2	0	0	0	0	copy fasta	RIC1	chr9	5624107	5781557