JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RIC1_chr9_5624107_5781557	0/0	t0013	2515	2	0	2	0	0	0	copy fasta	RIC1	chr9	5624107	5781557
RIC1_chr9_5624107_5781557	0/0	t0014	2515	2	2	0	0	0	0	copy fasta	RIC1	chr9	5624107	5781557
RIC1_chr9_5624107_5781557	0/0	t0015	2515	1	0	0	1	0	0	copy fasta	RIC1	chr9	5624107	5781557
RIC1_chr9_5624107_5781557	0/0	t0016	2515	1	0	0	1	0	0	copy fasta	RIC1	chr9	5624107	5781557
RIC1_chr9_5624107_5781557	0/0	t0017	2515	1	1	0	0	0	0	copy fasta	RIC1	chr9	5624107	5781557
RIC1_chr9_5624107_5781557	0/0	t0018	2515	1	1	0	0	0	0	copy fasta	RIC1	chr9	5624107	5781557
RIC1_chr9_5624107_5781557	0/0	t0019	2515	1	1	0	0	0	0	copy fasta	RIC1	chr9	5624107	5781557
RIC1_chr9_5624107_5781557	0/0	t0020	2515	1	1	0	0	0	0	copy fasta	RIC1	chr9	5624107	5781557
RIC1_chr9_5624107_5781557	0/0	t0021	2515	1	1	0	0	0	0	copy fasta	RIC1	chr9	5624107	5781557
RIC1_chr9_5624107_5781557	0/0	t0022	2515	1	1	0	0	0	0	copy fasta	RIC1	chr9	5624107	5781557
RIC1_chr9_5624107_5781557	0/0	t0023	2515	1	0	1	0	0	0	copy fasta	RIC1	chr9	5624107	5781557
RIC1_chr9_5624107_5781557	0/0	t0024	2515	1	1	0	0	0	0	copy fasta	RIC1	chr9	5624107	5781557
RIC1_chr9_5624107_5781557	0/0	t0025	2515	1	0	1	0	0	0	copy fasta	RIC1	chr9	5624107	5781557
RIC1_chr9_5624107_5781557	0/0	t0026	2515	1	0	1	0	0	0	copy fasta	RIC1	chr9	5624107	5781557
RIC1_chr9_5624107_5781557	0/0	t0027	2515	1	1	0	0	0	0	copy fasta	RIC1	chr9	5624107	5781557
RIC1_chr9_5624107_5781557	0/0	t0028	2515	1	0	0	1	0	0	copy fasta	RIC1	chr9	5624107	5781557
RIC1_chr9_5624107_5781557	0/0	t0029	2515	1	1	0	0	0	0	copy fasta	RIC1	chr9	5624107	5781557
RIC1_chr9_5624107_5781557	0/0	t0030	2515	1	0	0	0	0	1	copy fasta	RIC1	chr9	5624107	5781557
RIC3_chr11_8101056_8174025	0/0	t0001	4678	103	4	31	51	3	14	copy fasta	RIC3	chr11	8101056	8174025
RIC3_chr11_8101056_8174025	0/0	t0002	4678	71	3	13	50	1	4	copy fasta	RIC3	chr11	8101056	8174025
RIC3_chr11_8101056_8174025	0/0	t0003	4678	40	14	4	14	1	7	copy fasta	RIC3	chr11	8101056	8174025
RIC3_chr11_8101056_8174025	0/1	t0004	4678	29	5	6	15	0	2	copy fasta	RIC3	chr11	8101056	8174025
RIC3_chr11_8101056_8174025	0/0	t0005	4678	23	10	5	7	0	1	copy fasta	RIC3	chr11	8101056	8174025
RIC3_chr11_8101056_8174025	0/0	t0006	4678	11	9	2	0	0	0	copy fasta	RIC3	chr11	8101056	8174025
RIC3_chr11_8101056_8174025	0/0	t0007	4678	8	8	0	0	0	0	copy fasta	RIC3	chr11	8101056	8174025
RIC3_chr11_8101056_8174025	0/0	t0008	4676	8	0	8	0	0	0	copy fasta	RIC3	chr11	8101056	8174025
RIC3_chr11_8101056_8174025	0/0	t0009	4678	6	6	0	0	0	0	copy fasta	RIC3	chr11	8101056	8174025
RIC3_chr11_8101056_8174025	0/0	t0010	4678	6	4	2	0	0	0	copy fasta	RIC3	chr11	8101056	8174025
RIC3_chr11_8101056_8174025	0/0	t0011	4683	6	6	0	0	0	0	copy fasta	RIC3	chr11	8101056	8174025
RIC3_chr11_8101056_8174025	0/0	t0012	4678	3	3	0	0	0	0	copy fasta	RIC3	chr11	8101056	8174025
RIC3_chr11_8101056_8174025	0/0	t0013	4678	3	3	0	0	0	0	copy fasta	RIC3	chr11	8101056	8174025
RIC3_chr11_8101056_8174025	0/0	t0014	4678	3	0	0	0	1	2	copy fasta	RIC3	chr11	8101056	8174025
RIC3_chr11_8101056_8174025	0/0	t0015	4682	3	0	0	3	0	0	copy fasta	RIC3	chr11	8101056	8174025
RIC3_chr11_8101056_8174025	0/0	t0016	4678	3	3	0	0	0	0	copy fasta	RIC3	chr11	8101056	8174025
RIC3_chr11_8101056_8174025	0/0	t0017	4678	2	1	1	0	0	0	copy fasta	RIC3	chr11	8101056	8174025
RIC3_chr11_8101056_8174025	0/0	t0018	4678	2	2	0	0	0	0	copy fasta	RIC3	chr11	8101056	8174025
RIC3_chr11_8101056_8174025	0/0	t0019	4678	2	0	0	2	0	0	copy fasta	RIC3	chr11	8101056	8174025
RIC3_chr11_8101056_8174025	0/0	t0020	4678	2	0	0	0	0	2	copy fasta	RIC3	chr11	8101056	8174025
RIC3_chr11_8101056_8174025	0/0	t0021	4678	2	0	0	2	0	0	copy fasta	RIC3	chr11	8101056	8174025
RIC3_chr11_8101056_8174025	0/0	t0022	4678	2	2	0	0	0	0	copy fasta	RIC3	chr11	8101056	8174025
RIC3_chr11_8101056_8174025	0/0	t0023	4678	2	2	0	0	0	0	copy fasta	RIC3	chr11	8101056	8174025
RIC3_chr11_8101056_8174025	0/0	t0024	4678	1	1	0	0	0	0	copy fasta	RIC3	chr11	8101056	8174025
RIC3_chr11_8101056_8174025	0/0	t0025	4678	1	1	0	0	0	0	copy fasta	RIC3	chr11	8101056	8174025
RIC3_chr11_8101056_8174025	0/0	t0026	4678	1	1	0	0	0	0	copy fasta	RIC3	chr11	8101056	8174025
RIC3_chr11_8101056_8174025	0/0	t0027	4678	1	0	0	0	0	1	copy fasta	RIC3	chr11	8101056	8174025
RIC3_chr11_8101056_8174025	0/0	t0028	4678	1	0	0	1	0	0	copy fasta	RIC3	chr11	8101056	8174025
RIC3_chr11_8101056_8174025	0/0	t0029	4678	1	1	0	0	0	0	copy fasta	RIC3	chr11	8101056	8174025
RIC3_chr11_8101056_8174025	0/0	t0030	4678	1	1	0	0	0	0	copy fasta	RIC3	chr11	8101056	8174025
RIC3_chr11_8101056_8174025	0/0	t0031	4679	1	1	0	0	0	0	copy fasta	RIC3	chr11	8101056	8174025
RIC3_chr11_8101056_8174025	0/0	t0032	4678	1	0	0	1	0	0	copy fasta	RIC3	chr11	8101056	8174025