JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RIC3_chr11_8101056_8174025	0/0	t0033	4678	1	0	0	1	0	0	copy fasta	RIC3	chr11	8101056	8174025
RIC3_chr11_8101056_8174025	0/0	t0034	4678	1	0	0	1	0	0	copy fasta	RIC3	chr11	8101056	8174025
RIC3_chr11_8101056_8174025	0/0	t0035	4678	1	0	0	1	0	0	copy fasta	RIC3	chr11	8101056	8174025
RIC3_chr11_8101056_8174025	0/0	t0036	4678	1	0	0	0	0	1	copy fasta	RIC3	chr11	8101056	8174025
RIC3_chr11_8101056_8174025	1/0	t0037	4679	1	0	0	0	0	0	copy fasta	RIC3	chr11	8101056	8174025
RIC3_chr11_8101056_8174025	0/0	t0038	4678	1	0	0	1	0	0	copy fasta	RIC3	chr11	8101056	8174025
RIC3_chr11_8101056_8174025	0/0	t0039	4678	1	0	1	0	0	0	copy fasta	RIC3	chr11	8101056	8174025
RIC3_chr11_8101056_8174025	0/0	t0040	4678	1	0	0	0	0	1	copy fasta	RIC3	chr11	8101056	8174025
RIC3_chr11_8101056_8174025	0/0	t0041	4678	1	1	0	0	0	0	copy fasta	RIC3	chr11	8101056	8174025
RIC3_chr11_8101056_8174025	0/0	t0042	4678	1	0	0	0	0	1	copy fasta	RIC3	chr11	8101056	8174025
RIC3_chr11_8101056_8174025	0/0	t0043	4678	1	0	0	1	0	0	copy fasta	RIC3	chr11	8101056	8174025
RIC3_chr11_8101056_8174025	0/0	t0044	4678	1	1	0	0	0	0	copy fasta	RIC3	chr11	8101056	8174025
RIC3_chr11_8101056_8174025	0/0	t0045	4678	1	0	0	0	0	1	copy fasta	RIC3	chr11	8101056	8174025
RIC3_chr11_8101056_8174025	0/0	t0046	4683	1	1	0	0	0	0	copy fasta	RIC3	chr11	8101056	8174025
RIC3_chr11_8101056_8174025	0/0	t0047	4678	1	1	0	0	0	0	copy fasta	RIC3	chr11	8101056	8174025
RIC3_chr11_8101056_8174025	0/0	t0048	4678	1	0	0	0	0	1	copy fasta	RIC3	chr11	8101056	8174025
RIC3_chr11_8101056_8174025	0/0	t0049	4678	1	0	0	1	0	0	copy fasta	RIC3	chr11	8101056	8174025
RIC3_chr11_8101056_8174025	0/0	t0050	4678	1	0	0	1	0	0	copy fasta	RIC3	chr11	8101056	8174025
RIC3_chr11_8101056_8174025	0/0	t0051	4678	1	0	0	1	0	0	copy fasta	RIC3	chr11	8101056	8174025
RIC3_chr11_8101056_8174025	0/0	t0052	4678	1	0	1	0	0	0	copy fasta	RIC3	chr11	8101056	8174025
RIC3_chr11_8101056_8174025	0/0	t0053	4678	1	1	0	0	0	0	copy fasta	RIC3	chr11	8101056	8174025
RIC8A_chr11_202708_220113	1/0	t0001	1911	173	52	22	64	5	29	copy fasta	RIC8A	chr11	202708	220113
RIC8A_chr11_202708_220113	0/0	t0002	1911	138	18	22	90	0	8	copy fasta	RIC8A	chr11	202708	220113
RIC8A_chr11_202708_220113	0/0	t0003	1911	47	6	9	25	1	6	copy fasta	RIC8A	chr11	202708	220113
RIC8A_chr11_202708_220113	0/1	t0004	1911	29	4	16	0	5	3	copy fasta	RIC8A	chr11	202708	220113
RIC8A_chr11_202708_220113	0/0	t0005	1910	16	12	3	0	0	1	copy fasta	RIC8A	chr11	202708	220113
RIC8A_chr11_202708_220113	0/0	t0006	1911	8	0	4	3	1	0	copy fasta	RIC8A	chr11	202708	220113
RIC8A_chr11_202708_220113	0/0	t0007	1911	3	0	3	0	0	0	copy fasta	RIC8A	chr11	202708	220113
RIC8A_chr11_202708_220113	0/0	t0008	1911	2	2	0	0	0	0	copy fasta	RIC8A	chr11	202708	220113
RIC8A_chr11_202708_220113	0/0	t0009	1911	2	0	0	0	2	0	copy fasta	RIC8A	chr11	202708	220113
RIC8A_chr11_202708_220113	0/0	t0010	1911	2	0	1	0	0	1	copy fasta	RIC8A	chr11	202708	220113
RIC8A_chr11_202708_220113	0/0	t0011	1911	2	0	2	0	0	0	copy fasta	RIC8A	chr11	202708	220113
RIC8A_chr11_202708_220113	0/0	t0012	1911	2	2	0	0	0	0	copy fasta	RIC8A	chr11	202708	220113
RIC8A_chr11_202708_220113	0/0	t0013	1911	1	0	0	1	0	0	copy fasta	RIC8A	chr11	202708	220113
RIC8A_chr11_202708_220113	0/0	t0014	1911	1	0	0	1	0	0	copy fasta	RIC8A	chr11	202708	220113
RIC8A_chr11_202708_220113	0/0	t0015	1911	1	1	0	0	0	0	copy fasta	RIC8A	chr11	202708	220113
RIC8A_chr11_202708_220113	0/0	t0016	1911	1	0	0	1	0	0	copy fasta	RIC8A	chr11	202708	220113
RIC8A_chr11_202708_220113	0/0	t0017	1911	1	0	0	1	0	0	copy fasta	RIC8A	chr11	202708	220113
RIC8A_chr11_202708_220113	0/0	t0018	1911	1	0	0	1	0	0	copy fasta	RIC8A	chr11	202708	220113
RIC8A_chr11_202708_220113	0/0	t0019	1911	1	1	0	0	0	0	copy fasta	RIC8A	chr11	202708	220113
RIC8A_chr11_202708_220113	0/0	t0020	1911	1	0	0	1	0	0	copy fasta	RIC8A	chr11	202708	220113
RIC8B_chr12_106769682_106894316	1/1	t0001	3366	138	11	43	59	9	14	copy fasta	RIC8B	chr12	106769682	106894316
RIC8B_chr12_106769682_106894316	0/0	t0002	3366	82	21	19	34	2	6	copy fasta	RIC8B	chr12	106769682	106894316
RIC8B_chr12_106769682_106894316	0/0	t0003	3366	22	4	5	0	3	10	copy fasta	RIC8B	chr12	106769682	106894316
RIC8B_chr12_106769682_106894316	0/0	t0004	3366	22	21	0	1	0	0	copy fasta	RIC8B	chr12	106769682	106894316
RIC8B_chr12_106769682_106894316	0/0	t0005	3366	13	6	3	0	2	2	copy fasta	RIC8B	chr12	106769682	106894316
RIC8B_chr12_106769682_106894316	0/0	t0006	3366	7	0	0	7	0	0	copy fasta	RIC8B	chr12	106769682	106894316
RIC8B_chr12_106769682_106894316	0/0	t0007	3366	5	3	2	0	0	0	copy fasta	RIC8B	chr12	106769682	106894316
RIC8B_chr12_106769682_106894316	0/0	t0008	3366	3	1	2	0	0	0	copy fasta	RIC8B	chr12	106769682	106894316
RIC8B_chr12_106769682_106894316	0/0	t0009	3366	3	1	1	0	0	1	copy fasta	RIC8B	chr12	106769682	106894316