JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RIC8B_chr12_106769682_106894316	0/0	t0010	3366	3	3	0	0	0	0	copy fasta	RIC8B	chr12	106769682	106894316
RIC8B_chr12_106769682_106894316	0/0	t0011	3366	3	3	0	0	0	0	copy fasta	RIC8B	chr12	106769682	106894316
RIC8B_chr12_106769682_106894316	0/0	t0012	3366	1	0	0	0	0	1	copy fasta	RIC8B	chr12	106769682	106894316
RIC8B_chr12_106769682_106894316	0/0	t0013	3366	1	0	0	0	0	1	copy fasta	RIC8B	chr12	106769682	106894316
RIC8B_chr12_106769682_106894316	0/0	t0014	3366	1	1	0	0	0	0	copy fasta	RIC8B	chr12	106769682	106894316
RIC8B_chr12_106769682_106894316	0/0	t0015	3366	1	0	0	1	0	0	copy fasta	RIC8B	chr12	106769682	106894316
RIC8B_chr12_106769682_106894316	0/0	t0016	3366	1	0	0	1	0	0	copy fasta	RIC8B	chr12	106769682	106894316
RIC8B_chr12_106769682_106894316	0/0	t0017	3366	1	0	0	1	0	0	copy fasta	RIC8B	chr12	106769682	106894316
RIC8B_chr12_106769682_106894316	0/0	t0018	3366	1	0	0	1	0	0	copy fasta	RIC8B	chr12	106769682	106894316
RIC8B_chr12_106769682_106894316	0/0	t0019	3366	1	0	0	1	0	0	copy fasta	RIC8B	chr12	106769682	106894316
RIC8B_chr12_106769682_106894316	0/0	t0020	3366	1	1	0	0	0	0	copy fasta	RIC8B	chr12	106769682	106894316
RIC8B_chr12_106769682_106894316	0/0	t0021	3366	1	0	0	1	0	0	copy fasta	RIC8B	chr12	106769682	106894316
RIC8B_chr12_106769682_106894316	0/0	t0022	3380	1	0	1	0	0	0	copy fasta	RIC8B	chr12	106769682	106894316
RIC8B_chr12_106769682_106894316	0/0	t0023	3366	1	1	0	0	0	0	copy fasta	RIC8B	chr12	106769682	106894316
RIC8B_chr12_106769682_106894316	0/0	t0024	3366	1	1	0	0	0	0	copy fasta	RIC8B	chr12	106769682	106894316
RIC8B_chr12_106769682_106894316	0/0	t0025	3366	1	1	0	0	0	0	copy fasta	RIC8B	chr12	106769682	106894316
RIC8B_chr12_106769682_106894316	0/0	t0026	3366	1	0	0	0	0	1	copy fasta	RIC8B	chr12	106769682	106894316
RIC8B_chr12_106769682_106894316	0/0	t0027	3366	1	0	0	1	0	0	copy fasta	RIC8B	chr12	106769682	106894316
RIC8B_chr12_106769682_106894316	0/0	t0028	3366	1	1	0	0	0	0	copy fasta	RIC8B	chr12	106769682	106894316
RICTOR_chr5_38932920_39079399	0/1	t0001	4407	79	11	14	35	5	13	copy fasta	RICTOR	chr5	38932920	39079399
RICTOR_chr5_38932920_39079399	0/0	t0002	4407	65	29	5	23	1	7	copy fasta	RICTOR	chr5	38932920	39079399
RICTOR_chr5_38932920_39079399	0/0	t0003	4407	44	17	11	8	2	6	copy fasta	RICTOR	chr5	38932920	39079399
RICTOR_chr5_38932920_39079399	0/0	t0004	4407	40	1	0	37	1	1	copy fasta	RICTOR	chr5	38932920	39079399
RICTOR_chr5_38932920_39079399	0/0	t0005	4408	17	4	1	11	0	1	copy fasta	RICTOR	chr5	38932920	39079399
RICTOR_chr5_38932920_39079399	0/0	t0006	4407	17	0	5	12	0	0	copy fasta	RICTOR	chr5	38932920	39079399
RICTOR_chr5_38932920_39079399	0/0	t0007	4406	7	1	0	1	0	5	copy fasta	RICTOR	chr5	38932920	39079399
RICTOR_chr5_38932920_39079399	0/0	t0008	4407	6	0	0	6	0	0	copy fasta	RICTOR	chr5	38932920	39079399
RICTOR_chr5_38932920_39079399	0/0	t0009	4407	5	0	0	0	1	4	copy fasta	RICTOR	chr5	38932920	39079399
RICTOR_chr5_38932920_39079399	0/0	t0010	4402	4	4	0	0	0	0	copy fasta	RICTOR	chr5	38932920	39079399
RICTOR_chr5_38932920_39079399	0/0	t0011	4407	4	0	0	4	0	0	copy fasta	RICTOR	chr5	38932920	39079399
RICTOR_chr5_38932920_39079399	0/0	t0012	4407	3	0	0	0	0	3	copy fasta	RICTOR	chr5	38932920	39079399
RICTOR_chr5_38932920_39079399	0/0	t0013	4407	3	0	0	2	0	1	copy fasta	RICTOR	chr5	38932920	39079399
RICTOR_chr5_38932920_39079399	0/0	t0014	4406	3	0	1	1	1	0	copy fasta	RICTOR	chr5	38932920	39079399
RICTOR_chr5_38932920_39079399	0/0	t0015	4407	3	0	3	0	0	0	copy fasta	RICTOR	chr5	38932920	39079399
RICTOR_chr5_38932920_39079399	0/0	t0016	4408	2	1	1	0	0	0	copy fasta	RICTOR	chr5	38932920	39079399
RICTOR_chr5_38932920_39079399	0/0	t0017	4408	2	2	0	0	0	0	copy fasta	RICTOR	chr5	38932920	39079399
RICTOR_chr5_38932920_39079399	0/0	t0018	4407	2	1	1	0	0	0	copy fasta	RICTOR	chr5	38932920	39079399
RICTOR_chr5_38932920_39079399	0/0	t0019	4407	2	0	0	2	0	0	copy fasta	RICTOR	chr5	38932920	39079399
RICTOR_chr5_38932920_39079399	0/0	t0020	4407	2	0	0	0	2	0	copy fasta	RICTOR	chr5	38932920	39079399
RICTOR_chr5_38932920_39079399	0/0	t0021	4408	2	1	0	1	0	0	copy fasta	RICTOR	chr5	38932920	39079399
RICTOR_chr5_38932920_39079399	0/0	t0022	4407	2	2	0	0	0	0	copy fasta	RICTOR	chr5	38932920	39079399
RICTOR_chr5_38932920_39079399	0/0	t0023	4407	1	0	1	0	0	0	copy fasta	RICTOR	chr5	38932920	39079399
RICTOR_chr5_38932920_39079399	1/0	t0024	4407	1	0	0	0	0	0	copy fasta	RICTOR	chr5	38932920	39079399
RICTOR_chr5_38932920_39079399	0/0	t0025	4408	1	1	0	0	0	0	copy fasta	RICTOR	chr5	38932920	39079399
RICTOR_chr5_38932920_39079399	0/0	t0026	4408	1	1	0	0	0	0	copy fasta	RICTOR	chr5	38932920	39079399
RICTOR_chr5_38932920_39079399	0/0	t0027	4407	1	1	0	0	0	0	copy fasta	RICTOR	chr5	38932920	39079399
RICTOR_chr5_38932920_39079399	0/0	t0028	4407	1	0	0	0	1	0	copy fasta	RICTOR	chr5	38932920	39079399
RICTOR_chr5_38932920_39079399	0/0	t0029	4408	1	1	0	0	0	0	copy fasta	RICTOR	chr5	38932920	39079399
RICTOR_chr5_38932920_39079399	0/0	t0030	4409	1	0	0	1	0	0	copy fasta	RICTOR	chr5	38932920	39079399
RICTOR_chr5_38932920_39079399	0/0	t0031	4408	1	0	0	0	0	1	copy fasta	RICTOR	chr5	38932920	39079399