JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RIGI_chr9_32450302_32531196	0/0	t0006	1851	15	0	8	0	3	4	copy fasta	RIGI	chr9	32450302	32531196
RIGI_chr9_32450302_32531196	0/0	t0007	1851	10	9	1	0	0	0	copy fasta	RIGI	chr9	32450302	32531196
RIGI_chr9_32450302_32531196	0/0	t0008	1851	9	7	2	0	0	0	copy fasta	RIGI	chr9	32450302	32531196
RIGI_chr9_32450302_32531196	0/0	t0009	1851	9	9	0	0	0	0	copy fasta	RIGI	chr9	32450302	32531196
RIGI_chr9_32450302_32531196	0/0	t0010	1851	7	7	0	0	0	0	copy fasta	RIGI	chr9	32450302	32531196
RIGI_chr9_32450302_32531196	0/0	t0011	1851	7	0	1	0	1	5	copy fasta	RIGI	chr9	32450302	32531196
RIGI_chr9_32450302_32531196	0/0	t0012	1851	4	3	1	0	0	0	copy fasta	RIGI	chr9	32450302	32531196
RIGI_chr9_32450302_32531196	0/0	t0013	1851	4	4	0	0	0	0	copy fasta	RIGI	chr9	32450302	32531196
RIGI_chr9_32450302_32531196	0/0	t0014	1851	3	0	0	3	0	0	copy fasta	RIGI	chr9	32450302	32531196
RIGI_chr9_32450302_32531196	0/0	t0015	1850	2	0	0	1	0	1	copy fasta	RIGI	chr9	32450302	32531196
RIGI_chr9_32450302_32531196	0/0	t0016	1851	1	0	0	0	0	1	copy fasta	RIGI	chr9	32450302	32531196
RIGI_chr9_32450302_32531196	0/0	t0017	1851	1	1	0	0	0	0	copy fasta	RIGI	chr9	32450302	32531196
RIGI_chr9_32450302_32531196	0/0	t0018	1851	1	1	0	0	0	0	copy fasta	RIGI	chr9	32450302	32531196
RIGI_chr9_32450302_32531196	0/0	t0019	1851	1	0	0	1	0	0	copy fasta	RIGI	chr9	32450302	32531196
RIGI_chr9_32450302_32531196	0/0	t0020	1851	1	0	0	1	0	0	copy fasta	RIGI	chr9	32450302	32531196
RIGI_chr9_32450302_32531196	0/0	t0021	1851	1	0	1	0	0	0	copy fasta	RIGI	chr9	32450302	32531196
RIGI_chr9_32450302_32531196	0/0	t0022	1851	1	0	0	1	0	0	copy fasta	RIGI	chr9	32450302	32531196
RIGI_chr9_32450302_32531196	0/0	t0023	1851	1	1	0	0	0	0	copy fasta	RIGI	chr9	32450302	32531196
RIGI_chr9_32450302_32531196	0/0	t0024	1851	1	1	0	0	0	0	copy fasta	RIGI	chr9	32450302	32531196
RIGI_chr9_32450302_32531196	0/0	t0025	1851	1	1	0	0	0	0	copy fasta	RIGI	chr9	32450302	32531196
RIGI_chr9_32450302_32531196	0/0	t0026	1851	1	1	0	0	0	0	copy fasta	RIGI	chr9	32450302	32531196
RIGI_chr9_32450302_32531196	0/0	t0027	1851	1	0	0	1	0	0	copy fasta	RIGI	chr9	32450302	32531196
RIGI_chr9_32450302_32531196	0/0	t0028	1851	1	0	0	0	1	0	copy fasta	RIGI	chr9	32450302	32531196
RIIAD1_chr1_151716522_151734805	1/0	t0001	391	315	71	60	138	9	36	copy fasta	RIIAD1	chr1	151716522	151734805
RIIAD1_chr1_151716522_151734805	0/1	t0002	391	100	20	18	48	5	8	copy fasta	RIIAD1	chr1	151716522	151734805
RIIAD1_chr1_151716522_151734805	0/0	t0003	391	2	1	0	0	0	1	copy fasta	RIIAD1	chr1	151716522	151734805
RIIAD1_chr1_151716522_151734805	0/0	t0004	391	1	0	0	0	0	1	copy fasta	RIIAD1	chr1	151716522	151734805
RILPL1_chr12_123465054_123538719	0/0	t0001	2721	75	10	19	22	8	16	copy fasta	RILPL1	chr12	123465054	123538719
RILPL1_chr12_123465054_123538719	1/0	t0002	2722	38	18	11	0	7	1	copy fasta	RILPL1	chr12	123465054	123538719
RILPL1_chr12_123465054_123538719	0/0	t0003	2720	20	19	1	0	0	0	copy fasta	RILPL1	chr12	123465054	123538719
RILPL1_chr12_123465054_123538719	0/0	t0004	2721	15	7	7	0	1	0	copy fasta	RILPL1	chr12	123465054	123538719
RILPL1_chr12_123465054_123538719	0/1	t0005	2721	10	1	4	0	2	2	copy fasta	RILPL1	chr12	123465054	123538719
RILPL1_chr12_123465054_123538719	0/0	t0006	2721	9	5	3	0	0	1	copy fasta	RILPL1	chr12	123465054	123538719
RILPL1_chr12_123465054_123538719	0/0	t0007	2721	5	5	0	0	0	0	copy fasta	RILPL1	chr12	123465054	123538719
RILPL1_chr12_123465054_123538719	0/0	t0008	2722	4	1	3	0	0	0	copy fasta	RILPL1	chr12	123465054	123538719
RILPL1_chr12_123465054_123538719	0/0	t0009	2723	3	3	0	0	0	0	copy fasta	RILPL1	chr12	123465054	123538719
RILPL1_chr12_123465054_123538719	0/0	t0010	2721	3	3	0	0	0	0	copy fasta	RILPL1	chr12	123465054	123538719
RILPL1_chr12_123465054_123538719	0/0	t0011	2722	2	1	0	0	0	1	copy fasta	RILPL1	chr12	123465054	123538719
RILPL1_chr12_123465054_123538719	0/0	t0012	2724	2	2	0	0	0	0	copy fasta	RILPL1	chr12	123465054	123538719
RILPL1_chr12_123465054_123538719	0/0	t0013	2722	2	1	0	0	0	1	copy fasta	RILPL1	chr12	123465054	123538719
RILPL1_chr12_123465054_123538719	0/0	t0014	2721	2	2	0	0	0	0	copy fasta	RILPL1	chr12	123465054	123538719
RILPL1_chr12_123465054_123538719	0/0	t0015	2723	2	1	1	0	0	0	copy fasta	RILPL1	chr12	123465054	123538719
RILPL1_chr12_123465054_123538719	0/0	t0016	2722	2	0	1	0	0	1	copy fasta	RILPL1	chr12	123465054	123538719
RILPL1_chr12_123465054_123538719	0/0	t0017	2722	1	1	0	0	0	0	copy fasta	RILPL1	chr12	123465054	123538719
RILPL1_chr12_123465054_123538719	0/0	t0018	2721	1	0	0	1	0	0	copy fasta	RILPL1	chr12	123465054	123538719
RILPL1_chr12_123465054_123538719	0/0	t0019	2722	1	0	1	0	0	0	copy fasta	RILPL1	chr12	123465054	123538719
RILPL1_chr12_123465054_123538719	0/0	t0020	2722	1	1	0	0	0	0	copy fasta	RILPL1	chr12	123465054	123538719
RILPL1_chr12_123465054_123538719	0/0	t0021	2724	1	1	0	0	0	0	copy fasta	RILPL1	chr12	123465054	123538719
RILPL1_chr12_123465054_123538719	0/0	t0022	2722	1	0	1	0	0	0	copy fasta	RILPL1	chr12	123465054	123538719
RILPL1_chr12_123465054_123538719	0/0	t0023	2721	1	1	0	0	0	0	copy fasta	RILPL1	chr12	123465054	123538719