JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RILPL1_chr12_123465054_123538719	0/0	t0024	2723	1	1	0	0	0	0	copy fasta	RILPL1	chr12	123465054	123538719
RILPL1_chr12_123465054_123538719	0/0	t0025	2724	1	1	0	0	0	0	copy fasta	RILPL1	chr12	123465054	123538719
RILPL1_chr12_123465054_123538719	0/0	t0026	2724	1	1	0	0	0	0	copy fasta	RILPL1	chr12	123465054	123538719
RILPL1_chr12_123465054_123538719	0/0	t0027	2720	1	1	0	0	0	0	copy fasta	RILPL1	chr12	123465054	123538719
RILPL1_chr12_123465054_123538719	0/0	t0028	2721	1	0	1	0	0	0	copy fasta	RILPL1	chr12	123465054	123538719
RILPL1_chr12_123465054_123538719	0/0	t0029	2721	1	0	0	1	0	0	copy fasta	RILPL1	chr12	123465054	123538719
RILPL1_chr12_123465054_123538719	0/0	t0030	2722	1	0	0	0	0	1	copy fasta	RILPL1	chr12	123465054	123538719
RILPL1_chr12_123465054_123538719	0/0	t0031	2722	1	1	0	0	0	0	copy fasta	RILPL1	chr12	123465054	123538719
RILPL1_chr12_123465054_123538719	0/0	t0032	2722	1	0	1	0	0	0	copy fasta	RILPL1	chr12	123465054	123538719
RILPL2_chr12_123410039_123441684	1/1	t0001	1117	275	78	47	110	8	30	copy fasta	RILPL2	chr12	123410039	123441684
RILPL2_chr12_123410039_123441684	0/0	t0002	1117	52	6	21	10	9	6	copy fasta	RILPL2	chr12	123410039	123441684
RILPL2_chr12_123410039_123441684	0/0	t0003	1117	50	0	7	39	0	4	copy fasta	RILPL2	chr12	123410039	123441684
RILPL2_chr12_123410039_123441684	0/0	t0004	1117	2	2	0	0	0	0	copy fasta	RILPL2	chr12	123410039	123441684
RILPL2_chr12_123410039_123441684	0/0	t0005	1117	1	0	1	0	0	0	copy fasta	RILPL2	chr12	123410039	123441684
RILPL2_chr12_123410039_123441684	0/0	t0006	1117	1	0	1	0	0	0	copy fasta	RILPL2	chr12	123410039	123441684
RILPL2_chr12_123410039_123441684	0/0	t0007	1117	1	0	1	0	0	0	copy fasta	RILPL2	chr12	123410039	123441684
RILPL2_chr12_123410039_123441684	0/0	t0008	1117	1	1	0	0	0	0	copy fasta	RILPL2	chr12	123410039	123441684
RILPL2_chr12_123410039_123441684	0/0	t0009	1117	1	1	0	0	0	0	copy fasta	RILPL2	chr12	123410039	123441684
RILPL2_chr12_123410039_123441684	0/0	t0010	1117	1	0	0	1	0	0	copy fasta	RILPL2	chr12	123410039	123441684
RILPL2_chr12_123410039_123441684	0/0	t0011	1117	1	0	0	0	1	0	copy fasta	RILPL2	chr12	123410039	123441684
RILP_chr17_1641150_1654866	0/1	t0001	355	312	79	49	129	17	37	copy fasta	RILP	chr17	1641150	1654866
RILP_chr17_1641150_1654866	0/0	t0002	356	49	9	8	24	1	7	copy fasta	RILP	chr17	1641150	1654866
RILP_chr17_1641150_1654866	0/0	t0003	355	4	3	1	0	0	0	copy fasta	RILP	chr17	1641150	1654866
RILP_chr17_1641150_1654866	0/0	t0004	356	2	0	1	0	0	1	copy fasta	RILP	chr17	1641150	1654866
RILP_chr17_1641150_1654866	0/0	t0005	355	2	0	1	0	0	1	copy fasta	RILP	chr17	1641150	1654866
RILP_chr17_1641150_1654866	0/0	t0006	356	2	2	0	0	0	0	copy fasta	RILP	chr17	1641150	1654866
RILP_chr17_1641150_1654866	0/0	t0007	355	1	1	0	0	0	0	copy fasta	RILP	chr17	1641150	1654866
RILP_chr17_1641150_1654866	0/0	t0008	356	1	1	0	0	0	0	copy fasta	RILP	chr17	1641150	1654866
RILP_chr17_1641150_1654866	0/0	t0009	355	1	1	0	0	0	0	copy fasta	RILP	chr17	1641150	1654866
RILP_chr17_1641150_1654866	0/0	t0010	355	1	0	0	1	0	0	copy fasta	RILP	chr17	1641150	1654866
RIMBP2_chr12_130391133_130721299	0/1	t0001	1658	146	50	41	24	9	21	copy fasta	RIMBP2	chr12	130391133	130721299
RIMBP2_chr12_130391133_130721299	0/0	t0002	1658	20	6	2	10	1	1	copy fasta	RIMBP2	chr12	130391133	130721299
RIMBP2_chr12_130391133_130721299	0/0	t0003	1658	5	5	0	0	0	0	copy fasta	RIMBP2	chr12	130391133	130721299
RIMBP2_chr12_130391133_130721299	0/0	t0004	1658	2	2	0	0	0	0	copy fasta	RIMBP2	chr12	130391133	130721299
RIMBP2_chr12_130391133_130721299	0/0	t0005	1658	2	0	2	0	0	0	copy fasta	RIMBP2	chr12	130391133	130721299
RIMBP2_chr12_130391133_130721299	0/0	t0006	1658	1	1	0	0	0	0	copy fasta	RIMBP2	chr12	130391133	130721299
RIMBP2_chr12_130391133_130721299	0/0	t0007	1658	1	1	0	0	0	0	copy fasta	RIMBP2	chr12	130391133	130721299
RIMBP2_chr12_130391133_130721299	0/0	t0008	1658	1	1	0	0	0	0	copy fasta	RIMBP2	chr12	130391133	130721299
RIMBP2_chr12_130391133_130721299	0/0	t0009	1658	1	0	1	0	0	0	copy fasta	RIMBP2	chr12	130391133	130721299
RIMBP2_chr12_130391133_130721299	1/0	t0010	1658	1	0	0	0	0	0	copy fasta	RIMBP2	chr12	130391133	130721299
RIMBP3B_chr22_21378751_21394478	0/0	t0001	809	26	10	6	7	0	3	copy fasta	RIMBP3B	chr22	21378751	21394478
RIMBP3B_chr22_21378751_21394478	0/0	t0002	809	22	11	0	7	0	4	copy fasta	RIMBP3B	chr22	21378751	21394478
RIMBP3B_chr22_21378751_21394478	0/0	t0003	809	21	1	10	9	0	1	copy fasta	RIMBP3B	chr22	21378751	21394478
RIMBP3B_chr22_21378751_21394478	0/0	t0004	809	19	2	7	6	0	4	copy fasta	RIMBP3B	chr22	21378751	21394478
RIMBP3B_chr22_21378751_21394478	0/0	t0005	809	15	11	1	1	0	2	copy fasta	RIMBP3B	chr22	21378751	21394478
RIMBP3B_chr22_21378751_21394478	0/0	t0006	809	5	0	2	2	0	1	copy fasta	RIMBP3B	chr22	21378751	21394478
RIMBP3B_chr22_21378751_21394478	0/0	t0007	809	3	2	0	0	0	1	copy fasta	RIMBP3B	chr22	21378751	21394478
RIMBP3B_chr22_21378751_21394478	0/0	t0008	809	1	0	0	1	0	0	copy fasta	RIMBP3B	chr22	21378751	21394478
RIMBP3B_chr22_21378751_21394478	0/0	t0009	809	1	0	0	1	0	0	copy fasta	RIMBP3B	chr22	21378751	21394478
RIMBP3B_chr22_21378751_21394478	0/0	t0010	809	1	1	0	0	0	0	copy fasta	RIMBP3B	chr22	21378751	21394478