Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
B3GALT6_chr1_1227237_1240041	0/0	t0011	1816	1	0	0	1	0	0	copy fasta	B3GALT6	chr1	1227237	1240041
B3GALT6_chr1_1227237_1240041	0/0	t0012	1816	1	1	0	0	0	0	copy fasta	B3GALT6	chr1	1227237	1240041
B3GALT6_chr1_1227237_1240041	0/0	t0013	1816	1	1	0	0	0	0	copy fasta	B3GALT6	chr1	1227237	1240041
B3GALT6_chr1_1227237_1240041	0/0	t0014	1816	1	0	0	1	0	0	copy fasta	B3GALT6	chr1	1227237	1240041
B3GALT6_chr1_1227237_1240041	0/0	t0015	1816	1	0	1	0	0	0	copy fasta	B3GALT6	chr1	1227237	1240041
B3GALT6_chr1_1227237_1240041	0/0	t0016	1816	1	1	0	0	0	0	copy fasta	B3GALT6	chr1	1227237	1240041
B3GALT6_chr1_1227237_1240041	0/0	t0017	1816	1	1	0	0	0	0	copy fasta	B3GALT6	chr1	1227237	1240041
B3GALT6_chr1_1227237_1240041	0/0	t0018	1816	1	0	0	1	0	0	copy fasta	B3GALT6	chr1	1227237	1240041
B3GALT6_chr1_1227237_1240041	0/0	t0019	1816	1	1	0	0	0	0	copy fasta	B3GALT6	chr1	1227237	1240041
B3GALT6_chr1_1227237_1240041	0/0	t0020	1816	1	0	1	0	0	0	copy fasta	B3GALT6	chr1	1227237	1240041
B3GALT6_chr1_1227237_1240041	0/0	t0021	1816	1	0	0	1	0	0	copy fasta	B3GALT6	chr1	1227237	1240041
B3GALT6_chr1_1227237_1240041	0/0	t0022	1803	1	0	0	1	0	0	copy fasta	B3GALT6	chr1	1227237	1240041
B3GALT6_chr1_1227237_1240041	0/0	t0023	1816	1	0	0	0	1	0	copy fasta	B3GALT6	chr1	1227237	1240041
B3GALT6_chr1_1227237_1240041	0/0	t0024	1816	1	1	0	0	0	0	copy fasta	B3GALT6	chr1	1227237	1240041
B3GALT6_chr1_1227237_1240041	0/0	t0025	1816	1	1	0	0	0	0	copy fasta	B3GALT6	chr1	1227237	1240041
B3GALT9_chr9_120788467_120806787	0/1	t0001	2748	193	48	30	90	11	13	copy fasta	B3GALT9	chr9	120788467	120806787
B3GALT9_chr9_120788467_120806787	0/0	t0002	2748	47	0	8	38	0	1	copy fasta	B3GALT9	chr9	120788467	120806787
B3GALT9_chr9_120788467_120806787	1/0	t0003	2747	32	5	8	18	0	0	copy fasta	B3GALT9	chr9	120788467	120806787
B3GALT9_chr9_120788467_120806787	0/0	t0004	2748	28	4	10	8	2	4	copy fasta	B3GALT9	chr9	120788467	120806787
B3GALT9_chr9_120788467_120806787	0/0	t0005	2748	23	0	0	23	0	0	copy fasta	B3GALT9	chr9	120788467	120806787
B3GALT9_chr9_120788467_120806787	0/0	t0006	2748	18	15	3	0	0	0	copy fasta	B3GALT9	chr9	120788467	120806787
B3GALT9_chr9_120788467_120806787	0/0	t0007	2748	17	0	0	17	0	0	copy fasta	B3GALT9	chr9	120788467	120806787
B3GALT9_chr9_120788467_120806787	0/0	t0008	2749	8	0	5	1	0	2	copy fasta	B3GALT9	chr9	120788467	120806787
B3GALT9_chr9_120788467_120806787	0/0	t0009	2748	4	4	0	0	0	0	copy fasta	B3GALT9	chr9	120788467	120806787
B3GALT9_chr9_120788467_120806787	0/0	t0010	2748	3	3	0	0	0	0	copy fasta	B3GALT9	chr9	120788467	120806787
B3GALT9_chr9_120788467_120806787	0/0	t0011	2749	3	0	0	3	0	0	copy fasta	B3GALT9	chr9	120788467	120806787
B3GALT9_chr9_120788467_120806787	0/0	t0012	2748	3	3	0	0	0	0	copy fasta	B3GALT9	chr9	120788467	120806787
B3GALT9_chr9_120788467_120806787	0/0	t0013	2749	3	0	1	2	0	0	copy fasta	B3GALT9	chr9	120788467	120806787
B3GALT9_chr9_120788467_120806787	0/0	t0014	2748	2	2	0	0	0	0	copy fasta	B3GALT9	chr9	120788467	120806787
B3GALT9_chr9_120788467_120806787	0/0	t0015	2748	2	1	1	0	0	0	copy fasta	B3GALT9	chr9	120788467	120806787
B3GALT9_chr9_120788467_120806787	0/0	t0016	2749	2	0	1	1	0	0	copy fasta	B3GALT9	chr9	120788467	120806787
B3GALT9_chr9_120788467_120806787	0/0	t0017	2749	2	2	0	0	0	0	copy fasta	B3GALT9	chr9	120788467	120806787
B3GALT9_chr9_120788467_120806787	0/0	t0018	2748	2	0	1	0	0	1	copy fasta	B3GALT9	chr9	120788467	120806787
B3GALT9_chr9_120788467_120806787	0/0	t0019	2748	1	0	0	1	0	0	copy fasta	B3GALT9	chr9	120788467	120806787
B3GALT9_chr9_120788467_120806787	0/0	t0020	2748	1	1	0	0	0	0	copy fasta	B3GALT9	chr9	120788467	120806787
B3GALT9_chr9_120788467_120806787	0/0	t0021	2747	1	0	0	0	1	0	copy fasta	B3GALT9	chr9	120788467	120806787
B3GALT9_chr9_120788467_120806787	0/0	t0022	2748	1	0	0	1	0	0	copy fasta	B3GALT9	chr9	120788467	120806787
B3GALT9_chr9_120788467_120806787	0/0	t0023	2748	1	0	0	0	0	1	copy fasta	B3GALT9	chr9	120788467	120806787
B3GALT9_chr9_120788467_120806787	0/0	t0024	2749	1	0	1	0	0	0	copy fasta	B3GALT9	chr9	120788467	120806787
B3GALT9_chr9_120788467_120806787	0/0	t0025	2748	1	0	0	1	0	0	copy fasta	B3GALT9	chr9	120788467	120806787
B3GALT9_chr9_120788467_120806787	0/0	t0026	2748	1	1	0	0	0	0	copy fasta	B3GALT9	chr9	120788467	120806787
B3GALT9_chr9_120788467_120806787	0/0	t0027	2747	1	1	0	0	0	0	copy fasta	B3GALT9	chr9	120788467	120806787
B3GALT9_chr9_120788467_120806787	0/0	t0028	2749	1	0	0	1	0	0	copy fasta	B3GALT9	chr9	120788467	120806787
B3GALT9_chr9_120788467_120806787	0/0	t0029	2748	1	0	1	0	0	0	copy fasta	B3GALT9	chr9	120788467	120806787
B3GALT9_chr9_120788467_120806787	0/0	t0030	2748	1	0	0	1	0	0	copy fasta	B3GALT9	chr9	120788467	120806787
B3GAT1_chr11_134373508_134417242	0/0	t0001	2992	135	19	24	68	8	16	copy fasta	B3GAT1	chr11	134373508	134417242
B3GAT1_chr11_134373508_134417242	0/0	t0002	2972	35	13	14	6	2	0	copy fasta	B3GAT1	chr11	134373508	134417242
B3GAT1_chr11_134373508_134417242	0/1	t0003	2992	30	13	7	3	0	6	copy fasta	B3GAT1	chr11	134373508	134417242
B3GAT1_chr11_134373508_134417242	0/0	t0004	3007	21	14	2	5	0	0	copy fasta	B3GAT1	chr11	134373508	134417242
B3GAT1_chr11_134373508_134417242	1/0	t0005	2972	18	7	3	3	2	2	copy fasta	B3GAT1	chr11	134373508	134417242