JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RIMBP3B_chr22_21378751_21394478	0/0	t0011	809	1	0	1	0	0	0	copy fasta	RIMBP3B	chr22	21378751	21394478
RIMBP3B_chr22_21378751_21394478	0/0	t0012	809	1	1	0	0	0	0	copy fasta	RIMBP3B	chr22	21378751	21394478
RIMBP3B_chr22_21378751_21394478	0/0	t0013	809	1	0	1	0	0	0	copy fasta	RIMBP3B	chr22	21378751	21394478
RIMBP3B_chr22_21378751_21394478	0/0	t0014	809	1	1	0	0	0	0	copy fasta	RIMBP3B	chr22	21378751	21394478
RIMBP3C_chr22_21540666_21556461	0/0	t0001	877	117	36	24	44	1	12	copy fasta	RIMBP3C	chr22	21540666	21556461
RIMBP3C_chr22_21540666_21556461	0/0	t0002	877	72	4	15	42	0	11	copy fasta	RIMBP3C	chr22	21540666	21556461
RIMBP3C_chr22_21540666_21556461	0/0	t0003	877	3	2	1	0	0	0	copy fasta	RIMBP3C	chr22	21540666	21556461
RIMBP3C_chr22_21540666_21556461	0/0	t0004	877	1	1	0	0	0	0	copy fasta	RIMBP3C	chr22	21540666	21556461
RIMBP3C_chr22_21540666_21556461	0/0	t0005	877	1	0	0	1	0	0	copy fasta	RIMBP3C	chr22	21540666	21556461
RIMBP3C_chr22_21540666_21556461	0/0	t0006	877	1	1	0	0	0	0	copy fasta	RIMBP3C	chr22	21540666	21556461
RIMBP3C_chr22_21540666_21556461	0/0	t0007	846	1	0	0	1	0	0	copy fasta	RIMBP3C	chr22	21540666	21556461
RIMBP3C_chr22_21540666_21556461	0/0	t0008	877	1	0	0	0	0	1	copy fasta	RIMBP3C	chr22	21540666	21556461
RIMBP3C_chr22_21540666_21556461	0/0	t0009	889	1	0	0	0	1	0	copy fasta	RIMBP3C	chr22	21540666	21556461
RIMBP3C_chr22_21540666_21556461	0/0	t0010	877	1	0	0	1	0	0	copy fasta	RIMBP3C	chr22	21540666	21556461
RIMBP3C_chr22_21540666_21556461	0/0	t0011	877	1	0	0	1	0	0	copy fasta	RIMBP3C	chr22	21540666	21556461
RIMBP3_chr22_18600815_18616919	0/0	t0001	1186	16	8	5	0	0	3	copy fasta	RIMBP3	chr22	18600815	18616919
RIMBP3_chr22_18600815_18616919	0/0	t0002	1186	7	6	0	0	0	1	copy fasta	RIMBP3	chr22	18600815	18616919
RIMBP3_chr22_18600815_18616919	0/0	t0003	1186	3	3	0	0	0	0	copy fasta	RIMBP3	chr22	18600815	18616919
RIMBP3_chr22_18600815_18616919	0/0	t0004	1186	2	1	1	0	0	0	copy fasta	RIMBP3	chr22	18600815	18616919
RIMBP3_chr22_18600815_18616919	0/0	t0005	1186	1	1	0	0	0	0	copy fasta	RIMBP3	chr22	18600815	18616919
RIMBP3_chr22_18600815_18616919	0/0	t0006	1186	1	1	0	0	0	0	copy fasta	RIMBP3	chr22	18600815	18616919
RIMKLA_chr1_42375792_42429232	0/1	t0001	9401	48	0	16	27	1	3	copy fasta	RIMKLA	chr1	42375792	42429232
RIMKLA_chr1_42375792_42429232	0/0	t0002	9401	40	1	5	28	0	6	copy fasta	RIMKLA	chr1	42375792	42429232
RIMKLA_chr1_42375792_42429232	0/0	t0003	9403	28	3	9	12	3	1	copy fasta	RIMKLA	chr1	42375792	42429232
RIMKLA_chr1_42375792_42429232	0/0	t0004	9403	23	1	4	11	1	6	copy fasta	RIMKLA	chr1	42375792	42429232
RIMKLA_chr1_42375792_42429232	0/0	t0005	9402	19	7	1	9	2	0	copy fasta	RIMKLA	chr1	42375792	42429232
RIMKLA_chr1_42375792_42429232	0/0	t0006	9409	8	0	0	8	0	0	copy fasta	RIMKLA	chr1	42375792	42429232
RIMKLA_chr1_42375792_42429232	0/0	t0007	9401	8	8	0	0	0	0	copy fasta	RIMKLA	chr1	42375792	42429232
RIMKLA_chr1_42375792_42429232	0/0	t0008	9405	7	5	2	0	0	0	copy fasta	RIMKLA	chr1	42375792	42429232
RIMKLA_chr1_42375792_42429232	0/0	t0009	9402	7	7	0	0	0	0	copy fasta	RIMKLA	chr1	42375792	42429232
RIMKLA_chr1_42375792_42429232	0/0	t0010	9401	6	6	0	0	0	0	copy fasta	RIMKLA	chr1	42375792	42429232
RIMKLA_chr1_42375792_42429232	0/0	t0011	9408	6	1	3	0	2	0	copy fasta	RIMKLA	chr1	42375792	42429232
RIMKLA_chr1_42375792_42429232	0/0	t0012	9401	6	0	1	5	0	0	copy fasta	RIMKLA	chr1	42375792	42429232
RIMKLA_chr1_42375792_42429232	0/0	t0013	9400	5	0	0	5	0	0	copy fasta	RIMKLA	chr1	42375792	42429232
RIMKLA_chr1_42375792_42429232	0/0	t0014	9405	5	4	1	0	0	0	copy fasta	RIMKLA	chr1	42375792	42429232
RIMKLA_chr1_42375792_42429232	0/0	t0015	9404	5	1	0	3	0	1	copy fasta	RIMKLA	chr1	42375792	42429232
RIMKLA_chr1_42375792_42429232	0/0	t0016	9402	5	0	4	0	0	1	copy fasta	RIMKLA	chr1	42375792	42429232
RIMKLA_chr1_42375792_42429232	0/0	t0017	9400	5	0	0	3	1	1	copy fasta	RIMKLA	chr1	42375792	42429232
RIMKLA_chr1_42375792_42429232	1/0	t0018	9402	4	3	0	0	0	0	copy fasta	RIMKLA	chr1	42375792	42429232
RIMKLA_chr1_42375792_42429232	0/0	t0019	9402	4	3	1	0	0	0	copy fasta	RIMKLA	chr1	42375792	42429232
RIMKLA_chr1_42375792_42429232	0/0	t0020	9403	4	0	0	4	0	0	copy fasta	RIMKLA	chr1	42375792	42429232
RIMKLA_chr1_42375792_42429232	0/0	t0021	9400	3	0	2	0	0	1	copy fasta	RIMKLA	chr1	42375792	42429232
RIMKLA_chr1_42375792_42429232	0/0	t0022	9401	3	0	0	0	0	3	copy fasta	RIMKLA	chr1	42375792	42429232
RIMKLA_chr1_42375792_42429232	0/0	t0023	9405	3	3	0	0	0	0	copy fasta	RIMKLA	chr1	42375792	42429232
RIMKLA_chr1_42375792_42429232	0/0	t0024	9408	3	0	0	0	1	2	copy fasta	RIMKLA	chr1	42375792	42429232
RIMKLA_chr1_42375792_42429232	0/0	t0025	9403	3	0	0	3	0	0	copy fasta	RIMKLA	chr1	42375792	42429232
RIMKLA_chr1_42375792_42429232	0/0	t0026	9399	2	0	0	2	0	0	copy fasta	RIMKLA	chr1	42375792	42429232
RIMKLA_chr1_42375792_42429232	0/0	t0027	9402	2	0	0	0	0	2	copy fasta	RIMKLA	chr1	42375792	42429232
RIMKLA_chr1_42375792_42429232	0/0	t0028	9403	2	2	0	0	0	0	copy fasta	RIMKLA	chr1	42375792	42429232
RIMKLA_chr1_42375792_42429232	0/0	t0029	9402	2	0	2	0	0	0	copy fasta	RIMKLA	chr1	42375792	42429232