JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RIMKLA_chr1_42375792_42429232	0/0	t0030	9401	2	2	0	0	0	0	copy fasta	RIMKLA	chr1	42375792	42429232
RIMKLA_chr1_42375792_42429232	0/0	t0031	9400	2	0	0	2	0	0	copy fasta	RIMKLA	chr1	42375792	42429232
RIMKLA_chr1_42375792_42429232	0/0	t0032	9405	2	2	0	0	0	0	copy fasta	RIMKLA	chr1	42375792	42429232
RIMKLA_chr1_42375792_42429232	0/0	t0033	9403	2	0	0	2	0	0	copy fasta	RIMKLA	chr1	42375792	42429232
RIMKLA_chr1_42375792_42429232	0/0	t0034	9402	2	0	1	0	1	0	copy fasta	RIMKLA	chr1	42375792	42429232
RIMKLA_chr1_42375792_42429232	0/0	t0035	9404	2	2	0	0	0	0	copy fasta	RIMKLA	chr1	42375792	42429232
RIMKLA_chr1_42375792_42429232	0/0	t0036	9411	2	0	0	0	0	2	copy fasta	RIMKLA	chr1	42375792	42429232
RIMKLA_chr1_42375792_42429232	0/0	t0037	9402	2	2	0	0	0	0	copy fasta	RIMKLA	chr1	42375792	42429232
RIMKLA_chr1_42375792_42429232	0/0	t0038	9403	2	0	0	0	0	2	copy fasta	RIMKLA	chr1	42375792	42429232
RIMKLA_chr1_42375792_42429232	0/0	t0039	9402	2	2	0	0	0	0	copy fasta	RIMKLA	chr1	42375792	42429232
RIMKLA_chr1_42375792_42429232	0/0	t0040	9403	2	0	0	2	0	0	copy fasta	RIMKLA	chr1	42375792	42429232
RIMKLA_chr1_42375792_42429232	0/0	t0041	9401	2	0	0	2	0	0	copy fasta	RIMKLA	chr1	42375792	42429232
RIMKLA_chr1_42375792_42429232	0/0	t0042	9401	1	0	0	1	0	0	copy fasta	RIMKLA	chr1	42375792	42429232
RIMKLA_chr1_42375792_42429232	0/0	t0043	9401	1	0	0	0	0	1	copy fasta	RIMKLA	chr1	42375792	42429232
RIMKLA_chr1_42375792_42429232	0/0	t0044	9403	1	1	0	0	0	0	copy fasta	RIMKLA	chr1	42375792	42429232
RIMKLA_chr1_42375792_42429232	0/0	t0045	9402	1	1	0	0	0	0	copy fasta	RIMKLA	chr1	42375792	42429232
RIMKLA_chr1_42375792_42429232	0/0	t0046	9401	1	1	0	0	0	0	copy fasta	RIMKLA	chr1	42375792	42429232
RIMKLA_chr1_42375792_42429232	0/0	t0047	9400	1	1	0	0	0	0	copy fasta	RIMKLA	chr1	42375792	42429232
RIMKLA_chr1_42375792_42429232	0/0	t0048	9403	1	1	0	0	0	0	copy fasta	RIMKLA	chr1	42375792	42429232
RIMKLA_chr1_42375792_42429232	0/0	t0049	9403	1	1	0	0	0	0	copy fasta	RIMKLA	chr1	42375792	42429232
RIMKLA_chr1_42375792_42429232	0/0	t0050	9402	1	1	0	0	0	0	copy fasta	RIMKLA	chr1	42375792	42429232
RIMKLA_chr1_42375792_42429232	0/0	t0051	9402	1	0	0	1	0	0	copy fasta	RIMKLA	chr1	42375792	42429232
RIMKLA_chr1_42375792_42429232	0/0	t0052	9401	1	0	0	0	0	1	copy fasta	RIMKLA	chr1	42375792	42429232
RIMKLA_chr1_42375792_42429232	0/0	t0053	9401	1	0	0	1	0	0	copy fasta	RIMKLA	chr1	42375792	42429232
RIMKLA_chr1_42375792_42429232	0/0	t0054	9402	1	0	0	1	0	0	copy fasta	RIMKLA	chr1	42375792	42429232
RIMKLA_chr1_42375792_42429232	0/0	t0055	9390	1	0	0	1	0	0	copy fasta	RIMKLA	chr1	42375792	42429232
RIMKLA_chr1_42375792_42429232	0/0	t0056	9401	1	1	0	0	0	0	copy fasta	RIMKLA	chr1	42375792	42429232
RIMKLA_chr1_42375792_42429232	0/0	t0057	9400	1	0	0	1	0	0	copy fasta	RIMKLA	chr1	42375792	42429232
RIMKLA_chr1_42375792_42429232	0/0	t0058	9400	1	0	0	1	0	0	copy fasta	RIMKLA	chr1	42375792	42429232
RIMKLA_chr1_42375792_42429232	0/0	t0059	9401	1	0	1	0	0	0	copy fasta	RIMKLA	chr1	42375792	42429232
RIMKLA_chr1_42375792_42429232	0/0	t0060	9401	1	1	0	0	0	0	copy fasta	RIMKLA	chr1	42375792	42429232
RIMKLA_chr1_42375792_42429232	0/0	t0061	9399	1	0	1	0	0	0	copy fasta	RIMKLA	chr1	42375792	42429232
RIMKLA_chr1_42375792_42429232	0/0	t0062	9401	1	1	0	0	0	0	copy fasta	RIMKLA	chr1	42375792	42429232
RIMKLA_chr1_42375792_42429232	0/0	t0063	9401	1	1	0	0	0	0	copy fasta	RIMKLA	chr1	42375792	42429232
RIMKLA_chr1_42375792_42429232	0/0	t0064	9401	1	0	0	0	0	1	copy fasta	RIMKLA	chr1	42375792	42429232
RIMKLA_chr1_42375792_42429232	0/0	t0065	9404	1	0	0	1	0	0	copy fasta	RIMKLA	chr1	42375792	42429232
RIMKLA_chr1_42375792_42429232	0/0	t0066	9405	1	1	0	0	0	0	copy fasta	RIMKLA	chr1	42375792	42429232
RIMKLA_chr1_42375792_42429232	0/0	t0067	9404	1	0	0	1	0	0	copy fasta	RIMKLA	chr1	42375792	42429232
RIMKLA_chr1_42375792_42429232	0/0	t0068	9402	1	0	0	1	0	0	copy fasta	RIMKLA	chr1	42375792	42429232
RIMKLA_chr1_42375792_42429232	0/0	t0069	9401	1	1	0	0	0	0	copy fasta	RIMKLA	chr1	42375792	42429232
RIMKLA_chr1_42375792_42429232	0/0	t0070	9402	1	0	0	1	0	0	copy fasta	RIMKLA	chr1	42375792	42429232
RIMKLA_chr1_42375792_42429232	0/0	t0071	9403	1	0	0	1	0	0	copy fasta	RIMKLA	chr1	42375792	42429232
RIMKLA_chr1_42375792_42429232	0/0	t0072	9403	1	0	0	0	0	1	copy fasta	RIMKLA	chr1	42375792	42429232
RIMKLA_chr1_42375792_42429232	0/0	t0073	9402	1	0	1	0	0	0	copy fasta	RIMKLA	chr1	42375792	42429232
RIMKLA_chr1_42375792_42429232	0/0	t0074	9401	1	1	0	0	0	0	copy fasta	RIMKLA	chr1	42375792	42429232
RIMKLA_chr1_42375792_42429232	0/0	t0075	9401	1	0	0	1	0	0	copy fasta	RIMKLA	chr1	42375792	42429232
RIMKLA_chr1_42375792_42429232	0/0	t0076	9402	1	0	0	0	0	1	copy fasta	RIMKLA	chr1	42375792	42429232
RIMKLA_chr1_42375792_42429232	0/0	t0077	9401	1	0	1	0	0	0	copy fasta	RIMKLA	chr1	42375792	42429232
RIMKLA_chr1_42375792_42429232	0/0	t0078	9399	1	1	0	0	0	0	copy fasta	RIMKLA	chr1	42375792	42429232
RIMKLA_chr1_42375792_42429232	0/0	t0079	9399	1	0	1	0	0	0	copy fasta	RIMKLA	chr1	42375792	42429232