JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RIMKLA_chr1_42375792_42429232	0/0	t0080	9404	1	0	0	0	0	1	copy fasta	RIMKLA	chr1	42375792	42429232
RIMKLA_chr1_42375792_42429232	0/0	t0081	9402	1	1	0	0	0	0	copy fasta	RIMKLA	chr1	42375792	42429232
RIMKLA_chr1_42375792_42429232	0/0	t0082	9403	1	1	0	0	0	0	copy fasta	RIMKLA	chr1	42375792	42429232
RIMKLA_chr1_42375792_42429232	0/0	t0083	9405	1	1	0	0	0	0	copy fasta	RIMKLA	chr1	42375792	42429232
RIMKLA_chr1_42375792_42429232	0/0	t0084	9404	1	1	0	0	0	0	copy fasta	RIMKLA	chr1	42375792	42429232
RIMKLA_chr1_42375792_42429232	0/0	t0085	9403	1	1	0	0	0	0	copy fasta	RIMKLA	chr1	42375792	42429232
RIMKLA_chr1_42375792_42429232	0/0	t0086	9404	1	0	0	1	0	0	copy fasta	RIMKLA	chr1	42375792	42429232
RIMKLA_chr1_42375792_42429232	0/0	t0087	9403	1	0	0	1	0	0	copy fasta	RIMKLA	chr1	42375792	42429232
RIMKLA_chr1_42375792_42429232	0/0	t0088	9411	1	0	0	0	1	0	copy fasta	RIMKLA	chr1	42375792	42429232
RIMKLA_chr1_42375792_42429232	0/0	t0089	9410	1	0	0	0	0	1	copy fasta	RIMKLA	chr1	42375792	42429232
RIMKLA_chr1_42375792_42429232	0/0	t0090	9408	1	0	1	0	0	0	copy fasta	RIMKLA	chr1	42375792	42429232
RIMKLA_chr1_42375792_42429232	0/0	t0091	9409	1	0	0	0	1	0	copy fasta	RIMKLA	chr1	42375792	42429232
RIMKLA_chr1_42375792_42429232	0/0	t0092	9409	1	1	0	0	0	0	copy fasta	RIMKLA	chr1	42375792	42429232
RIMKLA_chr1_42375792_42429232	0/0	t0093	9408	1	0	0	0	0	1	copy fasta	RIMKLA	chr1	42375792	42429232
RIMKLA_chr1_42375792_42429232	0/0	t0094	9408	1	0	0	0	1	0	copy fasta	RIMKLA	chr1	42375792	42429232
RIMKLA_chr1_42375792_42429232	0/0	t0095	9401	1	1	0	0	0	0	copy fasta	RIMKLA	chr1	42375792	42429232
RIMKLA_chr1_42375792_42429232	0/0	t0096	9401	1	1	0	0	0	0	copy fasta	RIMKLA	chr1	42375792	42429232
RIMKLA_chr1_42375792_42429232	0/0	t0097	9402	1	1	0	0	0	0	copy fasta	RIMKLA	chr1	42375792	42429232
RIMKLA_chr1_42375792_42429232	0/0	t0098	9402	1	1	0	0	0	0	copy fasta	RIMKLA	chr1	42375792	42429232
RIMKLA_chr1_42375792_42429232	0/0	t0099	9403	1	0	1	0	0	0	copy fasta	RIMKLA	chr1	42375792	42429232
RIMKLA_chr1_42375792_42429232	0/0	t0100	9401	1	0	0	0	1	0	copy fasta	RIMKLA	chr1	42375792	42429232
RIMKLA_chr1_42375792_42429232	0/0	t0101	9401	1	0	0	0	0	1	copy fasta	RIMKLA	chr1	42375792	42429232
RIMKLA_chr1_42375792_42429232	0/0	t0102	9400	1	0	0	1	0	0	copy fasta	RIMKLA	chr1	42375792	42429232
RIMKLA_chr1_42375792_42429232	0/0	t0103	9401	1	1	0	0	0	0	copy fasta	RIMKLA	chr1	42375792	42429232
RIMKLA_chr1_42375792_42429232	0/0	t0104	9405	1	1	0	0	0	0	copy fasta	RIMKLA	chr1	42375792	42429232
RIMKLA_chr1_42375792_42429232	0/0	t0105	9407	1	0	0	1	0	0	copy fasta	RIMKLA	chr1	42375792	42429232
RIMKLA_chr1_42375792_42429232	0/0	t0106	9402	1	0	1	0	0	0	copy fasta	RIMKLA	chr1	42375792	42429232
RIMKLA_chr1_42375792_42429232	0/0	t0107	9403	1	0	0	1	0	0	copy fasta	RIMKLA	chr1	42375792	42429232
RIMKLB_chr12_8692991_8782191	0/0	t0001	3771	156	28	29	73	4	22	copy fasta	RIMKLB	chr12	8692991	8782191
RIMKLB_chr12_8692991_8782191	1/0	t0002	3771	34	4	11	10	1	7	copy fasta	RIMKLB	chr12	8692991	8782191
RIMKLB_chr12_8692991_8782191	0/0	t0003	3769	14	1	10	0	2	1	copy fasta	RIMKLB	chr12	8692991	8782191
RIMKLB_chr12_8692991_8782191	0/0	t0004	3770	8	0	5	3	0	0	copy fasta	RIMKLB	chr12	8692991	8782191
RIMKLB_chr12_8692991_8782191	0/0	t0005	3770	7	3	0	4	0	0	copy fasta	RIMKLB	chr12	8692991	8782191
RIMKLB_chr12_8692991_8782191	0/0	t0006	3769	7	5	2	0	0	0	copy fasta	RIMKLB	chr12	8692991	8782191
RIMKLB_chr12_8692991_8782191	0/0	t0007	3772	6	5	0	0	0	1	copy fasta	RIMKLB	chr12	8692991	8782191
RIMKLB_chr12_8692991_8782191	0/0	t0008	3770	6	0	0	6	0	0	copy fasta	RIMKLB	chr12	8692991	8782191
RIMKLB_chr12_8692991_8782191	0/0	t0009	3771	6	5	1	0	0	0	copy fasta	RIMKLB	chr12	8692991	8782191
RIMKLB_chr12_8692991_8782191	0/0	t0010	3771	6	6	0	0	0	0	copy fasta	RIMKLB	chr12	8692991	8782191
RIMKLB_chr12_8692991_8782191	0/0	t0011	3770	5	1	1	0	0	3	copy fasta	RIMKLB	chr12	8692991	8782191
RIMKLB_chr12_8692991_8782191	0/0	t0012	3770	4	3	1	0	0	0	copy fasta	RIMKLB	chr12	8692991	8782191
RIMKLB_chr12_8692991_8782191	0/0	t0013	3771	4	4	0	0	0	0	copy fasta	RIMKLB	chr12	8692991	8782191
RIMKLB_chr12_8692991_8782191	0/0	t0014	3771	4	0	0	3	0	1	copy fasta	RIMKLB	chr12	8692991	8782191
RIMKLB_chr12_8692991_8782191	0/0	t0015	3767	2	2	0	0	0	0	copy fasta	RIMKLB	chr12	8692991	8782191
RIMKLB_chr12_8692991_8782191	0/0	t0016	3771	2	0	0	2	0	0	copy fasta	RIMKLB	chr12	8692991	8782191
RIMKLB_chr12_8692991_8782191	0/0	t0017	3768	2	2	0	0	0	0	copy fasta	RIMKLB	chr12	8692991	8782191
RIMKLB_chr12_8692991_8782191	0/0	t0018	3771	2	2	0	0	0	0	copy fasta	RIMKLB	chr12	8692991	8782191
RIMKLB_chr12_8692991_8782191	0/0	t0019	3771	2	2	0	0	0	0	copy fasta	RIMKLB	chr12	8692991	8782191
RIMKLB_chr12_8692991_8782191	0/0	t0020	3769	2	1	0	0	0	1	copy fasta	RIMKLB	chr12	8692991	8782191
RIMKLB_chr12_8692991_8782191	0/0	t0021	3771	2	2	0	0	0	0	copy fasta	RIMKLB	chr12	8692991	8782191
RIMKLB_chr12_8692991_8782191	0/0	t0022	3771	1	1	0	0	0	0	copy fasta	RIMKLB	chr12	8692991	8782191