JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RIMKLB_chr12_8692991_8782191	0/0	t0023	3771	1	0	0	1	0	0	copy fasta	RIMKLB	chr12	8692991	8782191
RIMKLB_chr12_8692991_8782191	0/0	t0024	3771	1	1	0	0	0	0	copy fasta	RIMKLB	chr12	8692991	8782191
RIMKLB_chr12_8692991_8782191	0/0	t0025	3767	1	1	0	0	0	0	copy fasta	RIMKLB	chr12	8692991	8782191
RIMKLB_chr12_8692991_8782191	0/0	t0026	3769	1	0	0	1	0	0	copy fasta	RIMKLB	chr12	8692991	8782191
RIMKLB_chr12_8692991_8782191	0/0	t0027	3771	1	0	1	0	0	0	copy fasta	RIMKLB	chr12	8692991	8782191
RIMKLB_chr12_8692991_8782191	0/0	t0028	3771	1	1	0	0	0	0	copy fasta	RIMKLB	chr12	8692991	8782191
RIMKLB_chr12_8692991_8782191	0/0	t0029	3771	1	0	1	0	0	0	copy fasta	RIMKLB	chr12	8692991	8782191
RIMKLB_chr12_8692991_8782191	0/0	t0030	3771	1	0	0	0	1	0	copy fasta	RIMKLB	chr12	8692991	8782191
RIMKLB_chr12_8692991_8782191	0/1	t0031	3771	1	0	0	0	0	0	copy fasta	RIMKLB	chr12	8692991	8782191
RIMKLB_chr12_8692991_8782191	0/0	t0032	3767	1	1	0	0	0	0	copy fasta	RIMKLB	chr12	8692991	8782191
RIMKLB_chr12_8692991_8782191	0/0	t0033	3772	1	0	0	1	0	0	copy fasta	RIMKLB	chr12	8692991	8782191
RIMKLB_chr12_8692991_8782191	0/0	t0034	3771	1	1	0	0	0	0	copy fasta	RIMKLB	chr12	8692991	8782191
RIMOC1_chr5_41899344_41926636	0/1	t0001	4363	194	40	52	63	12	26	copy fasta	RIMOC1	chr5	41899344	41926636
RIMOC1_chr5_41899344_41926636	1/0	t0002	4362	28	0	2	20	2	3	copy fasta	RIMOC1	chr5	41899344	41926636
RIMOC1_chr5_41899344_41926636	0/0	t0003	4363	13	10	1	0	0	2	copy fasta	RIMOC1	chr5	41899344	41926636
RIMOC1_chr5_41899344_41926636	0/0	t0004	4363	11	1	8	2	0	0	copy fasta	RIMOC1	chr5	41899344	41926636
RIMOC1_chr5_41899344_41926636	0/0	t0005	4363	9	6	3	0	0	0	copy fasta	RIMOC1	chr5	41899344	41926636
RIMOC1_chr5_41899344_41926636	0/0	t0006	4363	8	0	0	8	0	0	copy fasta	RIMOC1	chr5	41899344	41926636
RIMOC1_chr5_41899344_41926636	0/0	t0007	4362	6	0	0	6	0	0	copy fasta	RIMOC1	chr5	41899344	41926636
RIMOC1_chr5_41899344_41926636	0/0	t0008	4363	4	4	0	0	0	0	copy fasta	RIMOC1	chr5	41899344	41926636
RIMOC1_chr5_41899344_41926636	0/0	t0009	4363	4	4	0	0	0	0	copy fasta	RIMOC1	chr5	41899344	41926636
RIMOC1_chr5_41899344_41926636	0/0	t0010	4363	4	4	0	0	0	0	copy fasta	RIMOC1	chr5	41899344	41926636
RIMOC1_chr5_41899344_41926636	0/0	t0011	4363	3	0	1	0	0	2	copy fasta	RIMOC1	chr5	41899344	41926636
RIMOC1_chr5_41899344_41926636	0/0	t0012	4363	3	3	0	0	0	0	copy fasta	RIMOC1	chr5	41899344	41926636
RIMOC1_chr5_41899344_41926636	0/0	t0013	4363	3	3	0	0	0	0	copy fasta	RIMOC1	chr5	41899344	41926636
RIMOC1_chr5_41899344_41926636	0/0	t0014	4363	3	3	0	0	0	0	copy fasta	RIMOC1	chr5	41899344	41926636
RIMOC1_chr5_41899344_41926636	0/0	t0015	4363	2	2	0	0	0	0	copy fasta	RIMOC1	chr5	41899344	41926636
RIMOC1_chr5_41899344_41926636	0/0	t0016	4363	2	0	1	0	1	0	copy fasta	RIMOC1	chr5	41899344	41926636
RIMOC1_chr5_41899344_41926636	0/0	t0017	4363	2	2	0	0	0	0	copy fasta	RIMOC1	chr5	41899344	41926636
RIMOC1_chr5_41899344_41926636	0/0	t0018	4363	2	2	0	0	0	0	copy fasta	RIMOC1	chr5	41899344	41926636
RIMOC1_chr5_41899344_41926636	0/0	t0019	4363	2	0	1	0	1	0	copy fasta	RIMOC1	chr5	41899344	41926636
RIMOC1_chr5_41899344_41926636	0/0	t0020	4363	2	0	2	0	0	0	copy fasta	RIMOC1	chr5	41899344	41926636
RIMOC1_chr5_41899344_41926636	0/0	t0021	4363	2	2	0	0	0	0	copy fasta	RIMOC1	chr5	41899344	41926636
RIMOC1_chr5_41899344_41926636	0/0	t0022	4363	1	1	0	0	0	0	copy fasta	RIMOC1	chr5	41899344	41926636
RIMOC1_chr5_41899344_41926636	0/0	t0023	4363	1	1	0	0	0	0	copy fasta	RIMOC1	chr5	41899344	41926636
RIMOC1_chr5_41899344_41926636	0/0	t0024	4363	1	1	0	0	0	0	copy fasta	RIMOC1	chr5	41899344	41926636
RIMOC1_chr5_41899344_41926636	0/0	t0025	4363	1	0	1	0	0	0	copy fasta	RIMOC1	chr5	41899344	41926636
RIMOC1_chr5_41899344_41926636	0/0	t0026	4363	1	1	0	0	0	0	copy fasta	RIMOC1	chr5	41899344	41926636
RIMOC1_chr5_41899344_41926636	0/0	t0027	4363	1	0	0	0	0	1	copy fasta	RIMOC1	chr5	41899344	41926636
RIMOC1_chr5_41899344_41926636	0/0	t0028	4363	1	1	0	0	0	0	copy fasta	RIMOC1	chr5	41899344	41926636
RIMOC1_chr5_41899344_41926636	0/0	t0029	4363	1	1	0	0	0	0	copy fasta	RIMOC1	chr5	41899344	41926636
RIMOC1_chr5_41899344_41926636	0/0	t0030	4362	1	0	0	1	0	0	copy fasta	RIMOC1	chr5	41899344	41926636
RIMOC1_chr5_41899344_41926636	0/0	t0031	4362	1	1	0	0	0	0	copy fasta	RIMOC1	chr5	41899344	41926636
RIMOC1_chr5_41899344_41926636	0/0	t0032	4363	1	1	0	0	0	0	copy fasta	RIMOC1	chr5	41899344	41926636
RIMS1_chr6_71881550_72408145	0/1	t0001	2906	35	6	13	8	0	7	copy fasta	RIMS1	chr6	71881550	72408145
RIMS1_chr6_71881550_72408145	0/0	t0002	2906	16	11	3	1	1	0	copy fasta	RIMS1	chr6	71881550	72408145
RIMS1_chr6_71881550_72408145	0/0	t0003	2894	15	4	4	1	4	2	copy fasta	RIMS1	chr6	71881550	72408145
RIMS1_chr6_71881550_72408145	0/0	t0004	2907	10	0	3	0	0	7	copy fasta	RIMS1	chr6	71881550	72408145
RIMS1_chr6_71881550_72408145	1/0	t0005	2906	8	4	2	0	0	1	copy fasta	RIMS1	chr6	71881550	72408145
RIMS1_chr6_71881550_72408145	0/0	t0006	2906	7	1	1	1	0	4	copy fasta	RIMS1	chr6	71881550	72408145