JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RIMS1_chr6_71881550_72408145	0/0	t0007	2894	7	5	2	0	0	0	copy fasta	RIMS1	chr6	71881550	72408145
RIMS1_chr6_71881550_72408145	0/0	t0008	2894	7	0	0	4	1	2	copy fasta	RIMS1	chr6	71881550	72408145
RIMS1_chr6_71881550_72408145	0/0	t0009	2906	5	3	1	0	0	1	copy fasta	RIMS1	chr6	71881550	72408145
RIMS1_chr6_71881550_72408145	0/0	t0010	2907	4	4	0	0	0	0	copy fasta	RIMS1	chr6	71881550	72408145
RIMS1_chr6_71881550_72408145	0/0	t0011	2906	3	1	2	0	0	0	copy fasta	RIMS1	chr6	71881550	72408145
RIMS1_chr6_71881550_72408145	0/0	t0012	2894	3	3	0	0	0	0	copy fasta	RIMS1	chr6	71881550	72408145
RIMS1_chr6_71881550_72408145	0/0	t0013	2906	3	3	0	0	0	0	copy fasta	RIMS1	chr6	71881550	72408145
RIMS1_chr6_71881550_72408145	0/0	t0014	2907	2	1	0	0	0	1	copy fasta	RIMS1	chr6	71881550	72408145
RIMS1_chr6_71881550_72408145	0/0	t0015	2906	2	2	0	0	0	0	copy fasta	RIMS1	chr6	71881550	72408145
RIMS1_chr6_71881550_72408145	0/0	t0016	2895	2	0	2	0	0	0	copy fasta	RIMS1	chr6	71881550	72408145
RIMS1_chr6_71881550_72408145	0/0	t0017	2907	2	1	0	0	0	1	copy fasta	RIMS1	chr6	71881550	72408145
RIMS1_chr6_71881550_72408145	0/0	t0018	2906	2	0	1	0	0	1	copy fasta	RIMS1	chr6	71881550	72408145
RIMS1_chr6_71881550_72408145	0/0	t0019	2924	1	1	0	0	0	0	copy fasta	RIMS1	chr6	71881550	72408145
RIMS1_chr6_71881550_72408145	0/0	t0020	2906	1	0	1	0	0	0	copy fasta	RIMS1	chr6	71881550	72408145
RIMS1_chr6_71881550_72408145	0/0	t0021	2894	1	0	0	0	0	1	copy fasta	RIMS1	chr6	71881550	72408145
RIMS1_chr6_71881550_72408145	0/0	t0022	2894	1	0	0	0	0	1	copy fasta	RIMS1	chr6	71881550	72408145
RIMS1_chr6_71881550_72408145	0/0	t0023	2888	1	0	0	1	0	0	copy fasta	RIMS1	chr6	71881550	72408145
RIMS1_chr6_71881550_72408145	0/0	t0024	2906	1	0	1	0	0	0	copy fasta	RIMS1	chr6	71881550	72408145
RIMS1_chr6_71881550_72408145	0/0	t0025	2906	1	0	0	0	0	1	copy fasta	RIMS1	chr6	71881550	72408145
RIMS2_chr8_103495610_104259430	0/0	t0001	2893	44	17	6	12	2	7	copy fasta	RIMS2	chr8	103495610	104259430
RIMS2_chr8_103495610_104259430	1/0	t0002	2888	33	1	5	12	5	9	copy fasta	RIMS2	chr8	103495610	104259430
RIMS2_chr8_103495610_104259430	0/1	t0003	2891	22	16	2	3	0	0	copy fasta	RIMS2	chr8	103495610	104259430
RIMS2_chr8_103495610_104259430	0/0	t0004	2892	15	7	1	5	0	2	copy fasta	RIMS2	chr8	103495610	104259430
RIMS2_chr8_103495610_104259430	0/0	t0005	2892	15	13	0	0	1	1	copy fasta	RIMS2	chr8	103495610	104259430
RIMS2_chr8_103495610_104259430	0/0	t0006	2890	12	12	0	0	0	0	copy fasta	RIMS2	chr8	103495610	104259430
RIMS2_chr8_103495610_104259430	0/0	t0007	2891	11	2	4	0	2	3	copy fasta	RIMS2	chr8	103495610	104259430
RIMS2_chr8_103495610_104259430	0/0	t0008	2894	6	3	0	3	0	0	copy fasta	RIMS2	chr8	103495610	104259430
RIMS2_chr8_103495610_104259430	0/0	t0009	2892	4	2	0	1	0	1	copy fasta	RIMS2	chr8	103495610	104259430
RIMS2_chr8_103495610_104259430	0/0	t0010	2892	2	2	0	0	0	0	copy fasta	RIMS2	chr8	103495610	104259430
RIMS2_chr8_103495610_104259430	0/0	t0011	2893	1	1	0	0	0	0	copy fasta	RIMS2	chr8	103495610	104259430
RIMS2_chr8_103495610_104259430	0/0	t0012	2890	1	1	0	0	0	0	copy fasta	RIMS2	chr8	103495610	104259430
RIMS2_chr8_103495610_104259430	0/0	t0013	2893	1	0	0	1	0	0	copy fasta	RIMS2	chr8	103495610	104259430
RIMS2_chr8_103495610_104259430	0/0	t0014	2891	1	1	0	0	0	0	copy fasta	RIMS2	chr8	103495610	104259430
RIMS2_chr8_103495610_104259430	0/0	t0015	2890	1	0	0	1	0	0	copy fasta	RIMS2	chr8	103495610	104259430
RIMS2_chr8_103495610_104259430	0/0	t0016	2888	1	0	0	0	0	1	copy fasta	RIMS2	chr8	103495610	104259430
RIMS2_chr8_103495610_104259430	0/0	t0017	2893	1	1	0	0	0	0	copy fasta	RIMS2	chr8	103495610	104259430
RIMS2_chr8_103495610_104259430	0/0	t0018	2890	1	1	0	0	0	0	copy fasta	RIMS2	chr8	103495610	104259430
RIMS3_chr1_40615680_40670682	1/0	t0001	6333	104	10	23	53	2	15	copy fasta	RIMS3	chr1	40615680	40670682
RIMS3_chr1_40615680_40670682	0/0	t0002	6333	61	4	15	36	2	4	copy fasta	RIMS3	chr1	40615680	40670682
RIMS3_chr1_40615680_40670682	0/0	t0003	6334	33	14	5	8	3	3	copy fasta	RIMS3	chr1	40615680	40670682
RIMS3_chr1_40615680_40670682	0/1	t0004	6333	28	12	8	1	1	5	copy fasta	RIMS3	chr1	40615680	40670682
RIMS3_chr1_40615680_40670682	0/0	t0005	6334	19	3	8	8	0	0	copy fasta	RIMS3	chr1	40615680	40670682
RIMS3_chr1_40615680_40670682	0/0	t0006	6334	14	4	1	7	2	0	copy fasta	RIMS3	chr1	40615680	40670682
RIMS3_chr1_40615680_40670682	0/0	t0007	6334	8	0	0	8	0	0	copy fasta	RIMS3	chr1	40615680	40670682
RIMS3_chr1_40615680_40670682	0/0	t0008	6334	7	6	1	0	0	0	copy fasta	RIMS3	chr1	40615680	40670682
RIMS3_chr1_40615680_40670682	0/0	t0009	6334	6	6	0	0	0	0	copy fasta	RIMS3	chr1	40615680	40670682
RIMS3_chr1_40615680_40670682	0/0	t0010	6334	6	5	1	0	0	0	copy fasta	RIMS3	chr1	40615680	40670682
RIMS3_chr1_40615680_40670682	0/0	t0011	6334	5	0	2	0	2	1	copy fasta	RIMS3	chr1	40615680	40670682
RIMS3_chr1_40615680_40670682	0/0	t0012	6333	5	3	2	0	0	0	copy fasta	RIMS3	chr1	40615680	40670682
RIMS3_chr1_40615680_40670682	0/0	t0013	6333	4	0	0	4	0	0	copy fasta	RIMS3	chr1	40615680	40670682