JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RIMS3_chr1_40615680_40670682	0/0	t0014	6333	4	0	0	4	0	0	copy fasta	RIMS3	chr1	40615680	40670682
RIMS3_chr1_40615680_40670682	0/0	t0015	6333	4	4	0	0	0	0	copy fasta	RIMS3	chr1	40615680	40670682
RIMS3_chr1_40615680_40670682	0/0	t0016	6334	3	0	0	2	0	1	copy fasta	RIMS3	chr1	40615680	40670682
RIMS3_chr1_40615680_40670682	0/0	t0017	6334	3	3	0	0	0	0	copy fasta	RIMS3	chr1	40615680	40670682
RIMS3_chr1_40615680_40670682	0/0	t0018	6334	3	3	0	0	0	0	copy fasta	RIMS3	chr1	40615680	40670682
RIMS3_chr1_40615680_40670682	0/0	t0019	6333	3	0	0	3	0	0	copy fasta	RIMS3	chr1	40615680	40670682
RIMS3_chr1_40615680_40670682	0/0	t0020	6333	3	0	0	0	0	3	copy fasta	RIMS3	chr1	40615680	40670682
RIMS3_chr1_40615680_40670682	0/0	t0021	6333	3	0	2	0	0	1	copy fasta	RIMS3	chr1	40615680	40670682
RIMS3_chr1_40615680_40670682	0/0	t0022	6334	2	1	1	0	0	0	copy fasta	RIMS3	chr1	40615680	40670682
RIMS3_chr1_40615680_40670682	0/0	t0023	6334	2	1	1	0	0	0	copy fasta	RIMS3	chr1	40615680	40670682
RIMS3_chr1_40615680_40670682	0/0	t0024	6333	2	2	0	0	0	0	copy fasta	RIMS3	chr1	40615680	40670682
RIMS3_chr1_40615680_40670682	0/0	t0025	6333	2	0	1	1	0	0	copy fasta	RIMS3	chr1	40615680	40670682
RIMS3_chr1_40615680_40670682	0/0	t0026	6333	2	0	0	2	0	0	copy fasta	RIMS3	chr1	40615680	40670682
RIMS3_chr1_40615680_40670682	0/0	t0027	6333	2	0	2	0	0	0	copy fasta	RIMS3	chr1	40615680	40670682
RIMS3_chr1_40615680_40670682	0/0	t0028	6334	1	1	0	0	0	0	copy fasta	RIMS3	chr1	40615680	40670682
RIMS3_chr1_40615680_40670682	0/0	t0029	6334	1	0	1	0	0	0	copy fasta	RIMS3	chr1	40615680	40670682
RIMS3_chr1_40615680_40670682	0/0	t0030	6334	1	0	0	0	0	1	copy fasta	RIMS3	chr1	40615680	40670682
RIMS3_chr1_40615680_40670682	0/0	t0031	6334	1	1	0	0	0	0	copy fasta	RIMS3	chr1	40615680	40670682
RIMS3_chr1_40615680_40670682	0/0	t0032	6334	1	0	0	1	0	0	copy fasta	RIMS3	chr1	40615680	40670682
RIMS3_chr1_40615680_40670682	0/0	t0033	6334	1	1	0	0	0	0	copy fasta	RIMS3	chr1	40615680	40670682
RIMS3_chr1_40615680_40670682	0/0	t0034	6334	1	1	0	0	0	0	copy fasta	RIMS3	chr1	40615680	40670682
RIMS3_chr1_40615680_40670682	0/0	t0035	6334	1	1	0	0	0	0	copy fasta	RIMS3	chr1	40615680	40670682
RIMS3_chr1_40615680_40670682	0/0	t0036	6334	1	1	0	0	0	0	copy fasta	RIMS3	chr1	40615680	40670682
RIMS3_chr1_40615680_40670682	0/0	t0037	6334	1	1	0	0	0	0	copy fasta	RIMS3	chr1	40615680	40670682
RIMS3_chr1_40615680_40670682	0/0	t0038	6333	1	1	0	0	0	0	copy fasta	RIMS3	chr1	40615680	40670682
RIMS3_chr1_40615680_40670682	0/0	t0039	6333	1	0	0	0	0	1	copy fasta	RIMS3	chr1	40615680	40670682
RIMS3_chr1_40615680_40670682	0/0	t0040	6333	1	0	0	1	0	0	copy fasta	RIMS3	chr1	40615680	40670682
RIMS3_chr1_40615680_40670682	0/0	t0041	6333	1	0	0	1	0	0	copy fasta	RIMS3	chr1	40615680	40670682
RIMS3_chr1_40615680_40670682	0/0	t0042	6333	1	0	0	0	0	1	copy fasta	RIMS3	chr1	40615680	40670682
RIMS3_chr1_40615680_40670682	0/0	t0043	6333	1	0	0	1	0	0	copy fasta	RIMS3	chr1	40615680	40670682
RIMS3_chr1_40615680_40670682	0/0	t0044	6333	1	0	0	1	0	0	copy fasta	RIMS3	chr1	40615680	40670682
RIMS3_chr1_40615680_40670682	0/0	t0045	6333	1	1	0	0	0	0	copy fasta	RIMS3	chr1	40615680	40670682
RIMS3_chr1_40615680_40670682	0/0	t0046	6333	1	1	0	0	0	0	copy fasta	RIMS3	chr1	40615680	40670682
RIMS3_chr1_40615680_40670682	0/0	t0047	6333	1	0	1	0	0	0	copy fasta	RIMS3	chr1	40615680	40670682
RIMS3_chr1_40615680_40670682	0/0	t0048	6333	1	0	0	0	0	1	copy fasta	RIMS3	chr1	40615680	40670682
RIMS3_chr1_40615680_40670682	0/0	t0049	6333	1	0	1	0	0	0	copy fasta	RIMS3	chr1	40615680	40670682
RIMS3_chr1_40615680_40670682	0/0	t0050	6333	1	0	0	0	0	1	copy fasta	RIMS3	chr1	40615680	40670682
RIMS3_chr1_40615680_40670682	0/0	t0051	6333	1	0	0	0	1	0	copy fasta	RIMS3	chr1	40615680	40670682
RIMS3_chr1_40615680_40670682	0/0	t0052	6333	1	1	0	0	0	0	copy fasta	RIMS3	chr1	40615680	40670682
RIMS3_chr1_40615680_40670682	0/0	t0053	6333	1	0	0	1	0	0	copy fasta	RIMS3	chr1	40615680	40670682
RIMS3_chr1_40615680_40670682	0/0	t0054	6333	1	0	0	0	0	1	copy fasta	RIMS3	chr1	40615680	40670682
RIMS3_chr1_40615680_40670682	0/0	t0055	6333	1	0	0	1	0	0	copy fasta	RIMS3	chr1	40615680	40670682
RIMS3_chr1_40615680_40670682	0/0	t0056	6333	1	0	0	1	0	0	copy fasta	RIMS3	chr1	40615680	40670682
RIMS3_chr1_40615680_40670682	0/0	t0057	6333	1	0	1	0	0	0	copy fasta	RIMS3	chr1	40615680	40670682
RIMS3_chr1_40615680_40670682	0/0	t0058	6333	1	0	1	0	0	0	copy fasta	RIMS3	chr1	40615680	40670682
RIMS3_chr1_40615680_40670682	0/0	t0059	6333	1	0	0	0	0	1	copy fasta	RIMS3	chr1	40615680	40670682
RIMS3_chr1_40615680_40670682	0/0	t0060	6333	1	0	0	0	0	1	copy fasta	RIMS3	chr1	40615680	40670682
RIMS3_chr1_40615680_40670682	0/0	t0061	6333	1	0	0	1	0	0	copy fasta	RIMS3	chr1	40615680	40670682
RIMS3_chr1_40615680_40670682	0/0	t0062	6333	1	0	0	1	0	0	copy fasta	RIMS3	chr1	40615680	40670682
RIMS3_chr1_40615680_40670682	0/0	t0063	6333	1	0	0	1	0	0	copy fasta	RIMS3	chr1	40615680	40670682