JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RIMS4_chr20_44746808_44815546	0/0	t0049	4602	1	0	0	1	0	0	copy fasta	RIMS4	chr20	44746808	44815546
RIMS4_chr20_44746808_44815546	0/0	t0050	4602	1	0	1	0	0	0	copy fasta	RIMS4	chr20	44746808	44815546
RIMS4_chr20_44746808_44815546	0/0	t0051	4602	1	0	0	1	0	0	copy fasta	RIMS4	chr20	44746808	44815546
RIMS4_chr20_44746808_44815546	0/0	t0052	4602	1	0	0	0	0	1	copy fasta	RIMS4	chr20	44746808	44815546
RIMS4_chr20_44746808_44815546	0/0	t0053	4602	1	1	0	0	0	0	copy fasta	RIMS4	chr20	44746808	44815546
RIMS4_chr20_44746808_44815546	0/0	t0054	4602	1	0	0	1	0	0	copy fasta	RIMS4	chr20	44746808	44815546
RIMS4_chr20_44746808_44815546	0/0	t0055	4602	1	0	0	1	0	0	copy fasta	RIMS4	chr20	44746808	44815546
RIMS4_chr20_44746808_44815546	0/0	t0056	4602	1	1	0	0	0	0	copy fasta	RIMS4	chr20	44746808	44815546
RIMS4_chr20_44746808_44815546	0/0	t0057	4602	1	0	0	0	0	1	copy fasta	RIMS4	chr20	44746808	44815546
RIMS4_chr20_44746808_44815546	0/0	t0058	4602	1	1	0	0	0	0	copy fasta	RIMS4	chr20	44746808	44815546
RIMS4_chr20_44746808_44815546	0/0	t0059	4602	1	0	0	1	0	0	copy fasta	RIMS4	chr20	44746808	44815546
RIMS4_chr20_44746808_44815546	0/0	t0060	4602	1	0	0	1	0	0	copy fasta	RIMS4	chr20	44746808	44815546
RIMS4_chr20_44746808_44815546	0/0	t0061	4602	1	1	0	0	0	0	copy fasta	RIMS4	chr20	44746808	44815546
RIMS4_chr20_44746808_44815546	0/0	t0062	4602	1	0	0	1	0	0	copy fasta	RIMS4	chr20	44746808	44815546
RIMS4_chr20_44746808_44815546	0/0	t0063	4602	1	0	0	0	0	1	copy fasta	RIMS4	chr20	44746808	44815546
RIMS4_chr20_44746808_44815546	0/0	t0064	4602	1	1	0	0	0	0	copy fasta	RIMS4	chr20	44746808	44815546
RIMS4_chr20_44746808_44815546	0/0	t0065	4602	1	1	0	0	0	0	copy fasta	RIMS4	chr20	44746808	44815546
RIMS4_chr20_44746808_44815546	0/0	t0066	4602	1	0	1	0	0	0	copy fasta	RIMS4	chr20	44746808	44815546
RIMS4_chr20_44746808_44815546	0/0	t0067	4602	1	0	0	1	0	0	copy fasta	RIMS4	chr20	44746808	44815546
RIMS4_chr20_44746808_44815546	0/0	t0068	4602	1	0	0	0	0	1	copy fasta	RIMS4	chr20	44746808	44815546
RIMS4_chr20_44746808_44815546	0/0	t0069	4602	1	0	1	0	0	0	copy fasta	RIMS4	chr20	44746808	44815546
RIMS4_chr20_44746808_44815546	0/0	t0070	4608	1	1	0	0	0	0	copy fasta	RIMS4	chr20	44746808	44815546
RIMS4_chr20_44746808_44815546	0/0	t0071	4590	1	1	0	0	0	0	copy fasta	RIMS4	chr20	44746808	44815546
RIMS4_chr20_44746808_44815546	0/0	t0072	4590	1	1	0	0	0	0	copy fasta	RIMS4	chr20	44746808	44815546
RIMS4_chr20_44746808_44815546	0/0	t0073	4593	1	0	1	0	0	0	copy fasta	RIMS4	chr20	44746808	44815546
RIMS4_chr20_44746808_44815546	0/0	t0074	4593	1	0	0	0	0	1	copy fasta	RIMS4	chr20	44746808	44815546
RIMS4_chr20_44746808_44815546	0/0	t0075	4593	1	0	0	0	1	0	copy fasta	RIMS4	chr20	44746808	44815546
RIMS4_chr20_44746808_44815546	0/0	t0076	4605	1	1	0	0	0	0	copy fasta	RIMS4	chr20	44746808	44815546
RIMS4_chr20_44746808_44815546	0/0	t0077	4605	1	1	0	0	0	0	copy fasta	RIMS4	chr20	44746808	44815546
RIMS4_chr20_44746808_44815546	0/0	t0078	4605	1	1	0	0	0	0	copy fasta	RIMS4	chr20	44746808	44815546
RIMS4_chr20_44746808_44815546	0/0	t0079	4605	1	1	0	0	0	0	copy fasta	RIMS4	chr20	44746808	44815546
RIMS4_chr20_44746808_44815546	0/0	t0080	4614	1	0	0	1	0	0	copy fasta	RIMS4	chr20	44746808	44815546
RIMS4_chr20_44746808_44815546	0/0	t0081	4614	1	0	0	1	0	0	copy fasta	RIMS4	chr20	44746808	44815546
RIMS4_chr20_44746808_44815546	0/0	t0082	4614	1	0	0	1	0	0	copy fasta	RIMS4	chr20	44746808	44815546
RIMS4_chr20_44746808_44815546	0/0	t0083	4614	1	0	0	1	0	0	copy fasta	RIMS4	chr20	44746808	44815546
RIMS4_chr20_44746808_44815546	0/0	t0084	4614	1	0	1	0	0	0	copy fasta	RIMS4	chr20	44746808	44815546
RIMS4_chr20_44746808_44815546	0/0	t0085	4617	1	0	0	1	0	0	copy fasta	RIMS4	chr20	44746808	44815546
RIMS4_chr20_44746808_44815546	0/0	t0086	4629	1	0	0	0	0	1	copy fasta	RIMS4	chr20	44746808	44815546
RIMS4_chr20_44746808_44815546	0/0	t0087	4629	1	0	1	0	0	0	copy fasta	RIMS4	chr20	44746808	44815546
RIMS4_chr20_44746808_44815546	0/0	t0088	4602	1	0	0	0	0	1	copy fasta	RIMS4	chr20	44746808	44815546
RIN1_chr11_66325241_66341434	0/0	t0001	2068	118	12	12	68	1	25	copy fasta	RIN1	chr11	66325241	66341434
RIN1_chr11_66325241_66341434	0/0	t0002	2067	100	17	13	58	4	8	copy fasta	RIN1	chr11	66325241	66341434
RIN1_chr11_66325241_66341434	0/1	t0003	2068	87	3	32	32	9	10	copy fasta	RIN1	chr11	66325241	66341434
RIN1_chr11_66325241_66341434	0/0	t0004	2067	58	25	6	24	2	1	copy fasta	RIN1	chr11	66325241	66341434
RIN1_chr11_66325241_66341434	0/0	t0005	2067	8	8	0	0	0	0	copy fasta	RIN1	chr11	66325241	66341434
RIN1_chr11_66325241_66341434	1/0	t0006	2068	8	7	0	0	0	0	copy fasta	RIN1	chr11	66325241	66341434
RIN1_chr11_66325241_66341434	0/0	t0007	2072	6	3	0	3	0	0	copy fasta	RIN1	chr11	66325241	66341434
RIN1_chr11_66325241_66341434	0/0	t0008	2072	6	5	1	0	0	0	copy fasta	RIN1	chr11	66325241	66341434
RIN1_chr11_66325241_66341434	0/0	t0009	2068	6	6	0	0	0	0	copy fasta	RIN1	chr11	66325241	66341434
RIN1_chr11_66325241_66341434	0/0	t0010	2068	5	0	5	0	0	0	copy fasta	RIN1	chr11	66325241	66341434