JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RIN1_chr11_66325241_66341434	0/0	t0011	2068	3	0	3	0	0	0	copy fasta	RIN1	chr11	66325241	66341434
RIN1_chr11_66325241_66341434	0/0	t0012	2067	2	2	0	0	0	0	copy fasta	RIN1	chr11	66325241	66341434
RIN1_chr11_66325241_66341434	0/0	t0013	2067	2	2	0	0	0	0	copy fasta	RIN1	chr11	66325241	66341434
RIN1_chr11_66325241_66341434	0/0	t0014	2067	1	0	0	1	0	0	copy fasta	RIN1	chr11	66325241	66341434
RIN1_chr11_66325241_66341434	0/0	t0015	2067	1	1	0	0	0	0	copy fasta	RIN1	chr11	66325241	66341434
RIN1_chr11_66325241_66341434	0/0	t0016	2067	1	1	0	0	0	0	copy fasta	RIN1	chr11	66325241	66341434
RIN1_chr11_66325241_66341434	0/0	t0017	2068	1	0	0	0	0	1	copy fasta	RIN1	chr11	66325241	66341434
RIN1_chr11_66325241_66341434	0/0	t0018	2068	1	0	0	0	0	1	copy fasta	RIN1	chr11	66325241	66341434
RIN1_chr11_66325241_66341434	0/0	t0019	2068	1	1	0	0	0	0	copy fasta	RIN1	chr11	66325241	66341434
RIN1_chr11_66325241_66341434	0/0	t0020	2068	1	0	0	1	0	0	copy fasta	RIN1	chr11	66325241	66341434
RIN1_chr11_66325241_66341434	0/0	t0021	2068	1	0	0	0	1	0	copy fasta	RIN1	chr11	66325241	66341434
RIN1_chr11_66325241_66341434	0/0	t0022	2068	1	0	0	0	1	0	copy fasta	RIN1	chr11	66325241	66341434
RIN1_chr11_66325241_66341434	0/0	t0023	2068	1	0	0	1	0	0	copy fasta	RIN1	chr11	66325241	66341434
RIN1_chr11_66325241_66341434	0/0	t0024	2067	1	1	0	0	0	0	copy fasta	RIN1	chr11	66325241	66341434
RIN2_chr20_19753258_20007456	0/1	t0001	1751	53	14	9	17	6	6	copy fasta	RIN2	chr20	19753258	20007456
RIN2_chr20_19753258_20007456	0/0	t0002	1750	39	18	3	13	0	5	copy fasta	RIN2	chr20	19753258	20007456
RIN2_chr20_19753258_20007456	0/0	t0003	1767	23	0	3	19	0	1	copy fasta	RIN2	chr20	19753258	20007456
RIN2_chr20_19753258_20007456	0/0	t0004	1752	22	1	10	1	2	8	copy fasta	RIN2	chr20	19753258	20007456
RIN2_chr20_19753258_20007456	0/0	t0005	1750	20	9	4	5	0	2	copy fasta	RIN2	chr20	19753258	20007456
RIN2_chr20_19753258_20007456	0/0	t0006	1766	17	0	1	16	0	0	copy fasta	RIN2	chr20	19753258	20007456
RIN2_chr20_19753258_20007456	0/0	t0007	1750	9	4	1	1	2	1	copy fasta	RIN2	chr20	19753258	20007456
RIN2_chr20_19753258_20007456	0/0	t0008	1751	9	6	1	1	0	1	copy fasta	RIN2	chr20	19753258	20007456
RIN2_chr20_19753258_20007456	0/0	t0009	1753	9	7	1	1	0	0	copy fasta	RIN2	chr20	19753258	20007456
RIN2_chr20_19753258_20007456	0/0	t0010	1741	8	0	8	0	0	0	copy fasta	RIN2	chr20	19753258	20007456
RIN2_chr20_19753258_20007456	0/0	t0011	1752	6	0	0	0	0	6	copy fasta	RIN2	chr20	19753258	20007456
RIN2_chr20_19753258_20007456	0/0	t0012	1752	6	3	2	1	0	0	copy fasta	RIN2	chr20	19753258	20007456
RIN2_chr20_19753258_20007456	0/0	t0013	1768	5	0	0	4	0	1	copy fasta	RIN2	chr20	19753258	20007456
RIN2_chr20_19753258_20007456	0/0	t0014	1769	4	0	0	4	0	0	copy fasta	RIN2	chr20	19753258	20007456
RIN2_chr20_19753258_20007456	0/0	t0015	1747	4	0	0	4	0	0	copy fasta	RIN2	chr20	19753258	20007456
RIN2_chr20_19753258_20007456	0/0	t0016	1753	4	0	0	0	0	4	copy fasta	RIN2	chr20	19753258	20007456
RIN2_chr20_19753258_20007456	0/0	t0017	1753	3	1	0	2	0	0	copy fasta	RIN2	chr20	19753258	20007456
RIN2_chr20_19753258_20007456	0/0	t0018	1763	3	0	3	0	0	0	copy fasta	RIN2	chr20	19753258	20007456
RIN2_chr20_19753258_20007456	0/0	t0019	1765	3	0	3	0	0	0	copy fasta	RIN2	chr20	19753258	20007456
RIN2_chr20_19753258_20007456	0/0	t0020	1738	2	0	0	0	0	2	copy fasta	RIN2	chr20	19753258	20007456
RIN2_chr20_19753258_20007456	1/0	t0021	1753	2	1	0	0	0	0	copy fasta	RIN2	chr20	19753258	20007456
RIN2_chr20_19753258_20007456	0/0	t0022	1754	2	1	1	0	0	0	copy fasta	RIN2	chr20	19753258	20007456
RIN2_chr20_19753258_20007456	0/0	t0023	1750	2	2	0	0	0	0	copy fasta	RIN2	chr20	19753258	20007456
RIN2_chr20_19753258_20007456	0/0	t0024	1747	1	1	0	0	0	0	copy fasta	RIN2	chr20	19753258	20007456
RIN2_chr20_19753258_20007456	0/0	t0025	1750	1	1	0	0	0	0	copy fasta	RIN2	chr20	19753258	20007456
RIN2_chr20_19753258_20007456	0/0	t0026	1751	1	1	0	0	0	0	copy fasta	RIN2	chr20	19753258	20007456
RIN2_chr20_19753258_20007456	0/0	t0027	1764	1	0	0	1	0	0	copy fasta	RIN2	chr20	19753258	20007456
RIN2_chr20_19753258_20007456	0/0	t0028	1765	1	0	0	1	0	0	copy fasta	RIN2	chr20	19753258	20007456
RIN2_chr20_19753258_20007456	0/0	t0029	1770	1	0	0	0	0	1	copy fasta	RIN2	chr20	19753258	20007456
RIN2_chr20_19753258_20007456	0/0	t0030	1738	1	1	0	0	0	0	copy fasta	RIN2	chr20	19753258	20007456
RIN2_chr20_19753258_20007456	0/0	t0031	1747	1	1	0	0	0	0	copy fasta	RIN2	chr20	19753258	20007456
RIN2_chr20_19753258_20007456	0/0	t0032	1749	1	1	0	0	0	0	copy fasta	RIN2	chr20	19753258	20007456
RIN2_chr20_19753258_20007456	0/0	t0033	1750	1	1	0	0	0	0	copy fasta	RIN2	chr20	19753258	20007456
RIN2_chr20_19753258_20007456	0/0	t0034	1750	1	1	0	0	0	0	copy fasta	RIN2	chr20	19753258	20007456
RIN2_chr20_19753258_20007456	0/0	t0035	1750	1	0	0	1	0	0	copy fasta	RIN2	chr20	19753258	20007456
RIN2_chr20_19753258_20007456	0/0	t0036	1752	1	0	1	0	0	0	copy fasta	RIN2	chr20	19753258	20007456